CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96005	Canola	cytosol	36.89	95.4
Bra004321.1-P	Field mustard	cytosol	92.44	81.89
CDX90348	Canola	cytosol	78.67	78.32
CDY63450	Canola	cytosol	77.78	77.43
CDX96006	Canola	cytosol	41.33	69.92
PGSC0003DMT400028452	Potato	cytosol	61.78	67.48
Solyc12g033130.1.1	Tomato	cytosol	60.44	66.02
KRG90803	Soybean	cytosol	58.67	63.77
VIT_01s0011g03390.t01	Wine grape	cytosol	59.56	63.21
KRH35966	Soybean	cytosol	59.11	63.03
GSMUA_Achr9P28440_001	Banana	cytosol	56.0	58.6
TraesCS4D01G045300.1	Wheat	cytosol	56.0	55.26
TraesCS4B01G045400.1	Wheat	cytosol	56.0	55.26
TraesCS4A01G268800.1	Wheat	cytosol	56.0	55.26
Os03t0710700-00	Rice	cytosol	55.11	53.45
EER91001	Sorghum	mitochondrion	55.56	53.42
Zm00001d033718_P001	Maize	cytosol	54.67	52.34
HORVU4Hr1G007360.7	Barley	cytosol	56.0	45.16
CDX79572	Canola	cytosol	41.33	45.15
CDX84635	Canola	cytosol, endoplasmic reticulum, peroxisome	39.56	43.2
CDY43977	Canola	cytosol	22.67	40.48
CDX87716	Canola	cytosol	22.22	39.68
CDX84289	Canola	cytosol	17.78	38.46
CDX87706	Canola	cytosol	14.22	36.78
CDY43980	Canola	cytosol	31.56	35.32
CDX87707	Canola	cytosol	18.67	30.66

Protein Annotations

Gene3D:1.10.3520.10	MapMan:5.4.6	GO:A0A078HL56	UniProt:A0A078HL56	EnsemblPlants:CDY38602	ProteinID:CDY38602
ProteinID:CDY38602.1	InterPro:GLTP_sf	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0120009	GO:GO:0120013	EnsemblPlantsGene:GSBRNA2T00066288001	InterPro:Glycolipid_transfer_prot_dom	InterPro:IPR036497	PFAM:PF08718
PANTHER:PTHR10219	PANTHER:PTHR10219:SF28	SUPFAM:SSF110004	UniParc:UPI0004EE679B	:	:

Description

BnaC06g30250DBnaC06g30250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HL56]

Coordinates

chrLK032427:+:221840..222875

Molecular Weight (calculated)

26196.6 Da

IEP (calculated)

6.925

GRAVY (calculated)

-0.276

Length

225 amino acids

Sequence
(BLAST)

001: MEKDMIEDAR FNTPLLVITE AFEELADLLK PRRQKRGEIS RNDVVSNDGL RLDAFCSACT HVSVLFGCLG FAFKFAEMEY VSKVRDLVEA SRTFDTLHNI
101: IDLDVMNQTV KTQGSYSRNL RRVRLGLDLI RAIFEQFLMT NEYYSLKDAA TKAYTQVCAP FHTWAVRTAV YAGMHTLPTR DQLLLRLNET DQSVEKNMRR
201: YMEASRPIIE YIDKLYIDRN IKLDW

Best Arabidopsis Sequence Match ( AT4G39670.1 )
(BLAST)

001: MEAEVEEEEE DMFEDAVCTT QARVNTPLSV ITEAFEDLAD LVKPQRSDEI DEDELRLDDF CSACTHVSVL FNCLGFAFKF AEMEYIAKVK DLVEASKTFE
101: TLHNILDLDV EKETVKTPGS HSRNLRRVRQ GLDLIRAIFE QFLIADDYSL KDAATTAYTE VCAPFHTWAV RTAVYAGMYT LPTRDQLLLR LNETDQSVEK
201: NMRRYMEASR PIIEYIDKLY IERNIKLDW

Arabidopsis Description

ACD11 homolog protein [Source:UniProtKB/Swiss-Prot;Acc:Q8L7U7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.