CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67837
CDX71796
CDX89063
CDY08228
CDY24050
CDY26125
CDY33064
CDY37482
CDY41153
CDY48365
CDY51733
CDY51734
CDY55133

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G34690.1	CDY08228	AT1G55190.1	18845362
AT2G34690.1	CDY24050	AT1G55190.1	18845362
AT2G34690.1	CDY26125	AT1G55190.1	18845362
AT2G34690.1	CDY33064	AT1G55190.1	18845362
AT2G34690.1	CDY37482	AT3G13720.1	18845362
AT2G34690.1	CDY51733	AT3G13720.1	18845362
AT2G34690.1	CDY51734	AT3G13720.1	18845362
AT2G34690.1	CDY55133	AT3G13720.1	18845362
AT2G34690.1	CDX67837	AT3G60600.1	18845362
AT2G34690.1	CDX71796	AT3G60600.1	18845362
AT2G34690.1	CDX89063	AT3G60600.1	18845362
AT2G34690.1	CDY41153	AT3G60600.1	18845362
AT2G34690.1	CDY48365	AT3G60600.1	18845362

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87706	Canola	cytosol	44.23	52.87
CDX96005	Canola	cytosol	37.5	44.83
CDX79572	Canola	cytosol	76.92	38.84
CDY43977	Canola	cytosol	45.19	37.3
CDX87716	Canola	cytosol	45.19	37.3
GSMUA_Achr5P02430_001	Banana	endoplasmic reticulum, extracellular	61.54	36.57
AT2G34690.1	Thale cress	cytosol	71.15	35.92
CDX84635	Canola	cytosol, endoplasmic reticulum, peroxisome	71.15	35.92
KRH11758	Soybean	cytosol	60.58	30.29
EER90780	Sorghum	cytosol	57.69	29.13
KRH36758	Soybean	cytosol	57.69	29.13
TraesCS5A01G423200.1	Wheat	cytosol	56.73	28.64
TraesCS5D01G431800.1	Wheat	cytosol	56.73	28.37
Os03t0784900-01	Rice	cytosol	55.77	28.02
VIT_10s0003g04580.t01	Wine grape	cytosol	54.81	27.8
PGSC0003DMT400054370	Potato	cytosol	55.77	27.62
Solyc02g070250.2.1	Tomato	cytosol	54.81	27.14
CDY43980	Canola	cytosol	51.92	26.87
TraesCS5B01G425200.1	Wheat	cytosol	56.73	23.79
Zm00001d034346_P002	Maize	mitochondrion	57.69	23.26
VIT_11s0052g00260.t01	Wine grape	cytosol, plastid	43.27	21.84
VIT_11s0052g00280.t01	Wine grape	cytosol	41.35	20.77
HORVU5Hr1G103320.2	Barley	nucleus, plastid	53.85	19.31
VIT_11s0052g00230.t01	Wine grape	cytosol	41.35	18.7
VIT_11s0052g00220.t01	Wine grape	cytosol	25.0	18.31
CDY38602	Canola	cytosol	38.46	17.78
CDX90348	Canola	cytosol	37.5	17.26
CDY63450	Canola	cytosol	36.54	16.81
VIT_11s0052g00240.t01	Wine grape	cytosol	40.38	10.74
CDX87707	Canola	cytosol	4.81	3.65
CDX96006	Canola	cytosol	0.96	0.75

Protein Annotations

Gene3D:1.10.3520.10	MapMan:5.4.6	GO:A0A078D7D3	EnsemblPlants:CDX84289	ProteinID:CDX84289	ProteinID:CDX84289.1
ncoils:Coil	InterPro:GLTP_sf	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0120009	GO:GO:0120013	EnsemblPlantsGene:GSBRNA2T00141385001	InterPro:Glycolipid_transfer_prot_dom	InterPro:IPR036497	PFAM:PF08718
PANTHER:PTHR10219	PANTHER:PTHR10219:SF28	SUPFAM:SSF110004	UniParc:UPI0004EB8404	:	:

Description

BnaC04g10510D

Coordinates

chrLK031836:-:1481902..1482583

Molecular Weight (calculated)

11756.1 Da

IEP (calculated)

9.458

GRAVY (calculated)

-0.446

Length

104 amino acids

Sequence
(BLAST)

001: MSTETIFKRE HTKKAKTCKD GNNSLKDPSS KSYAQVFAPH HGWAIRKAVA LGMYALPTRT HLLKMLNEEE AEAKIQMESY VNASAPVITY LDNLFLSKQL
101: GIDW

Best Arabidopsis Sequence Match ( AT2G34690.1 )
(BLAST)

001: MADSEADKPL RKISAAFKKL AIIVNSPNPE VPVTQFSHAC SLVSPLFGCL GIAFKFAEMD YVAKVDDLVR ASSSISTLVV MMDKDIEADC VRKAGSHTRN
101: LLRVKRGLDM VKVLFEQIIA SEGDNSLKDP ATKSYAQVFA PHHGWAIRKA VSLGMYALPT RAHLLNMLKE DEAAAKIHMQ SYVNSSAPLI TYLDNLFLSK
201: QLGIDW

Arabidopsis Description

ACD11Accelerated cell death 11 [Source:UniProtKB/Swiss-Prot;Acc:O64587]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.