Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY51733 | Canola | plastid | 90.61 | 90.19 |
| CDY37482 | Canola | plastid | 61.97 | 63.16 |
| CDY51734 | Canola | plastid | 60.56 | 61.72 |
| AT3G13720.1 | Thale cress | cytosol, plasma membrane, plastid | 48.36 | 54.79 |
| CDY23634 | Canola | plasma membrane | 45.54 | 53.59 |
| CDX97509 | Canola | plasma membrane | 43.66 | 51.38 |
| CDY37483 | Canola | plasma membrane | 41.78 | 48.9 |
| CDY51735 | Canola | plasma membrane | 40.85 | 47.8 |
| Solyc03g121460.1.1 | Tomato | plastid | 38.97 | 45.6 |
| PGSC0003DMT400006409 | Potato | plasma membrane | 38.5 | 45.05 |
| KRH23330 | Soybean | plastid | 35.21 | 40.76 |
| KRH10001 | Soybean | mitochondrion | 34.74 | 40.22 |
| CDY33064 | Canola | cytosol, plasma membrane, plastid | 35.21 | 40.11 |
| CDY08228 | Canola | plasma membrane | 35.21 | 39.68 |
| CDY24050 | Canola | cytosol, plasma membrane, plastid | 34.74 | 39.57 |
| CDY26125 | Canola | cytosol, plasma membrane, plastid | 34.27 | 38.62 |
| KRH47141 | Soybean | plasma membrane | 30.05 | 35.96 |
| VIT_09s0002g02400.t01 | Wine grape | plastid | 32.39 | 35.75 |
| GSMUA_Achr7P09070_001 | Banana | plastid | 30.05 | 34.04 |
| KRH44167 | Soybean | plasma membrane | 27.7 | 33.52 |
| EES00126 | Sorghum | plastid | 26.76 | 29.69 |
| Zm00001d039455_P002 | Maize | extracellular, mitochondrion | 26.76 | 29.53 |
| CDY26225 | Canola | plasma membrane | 25.35 | 29.35 |
| TraesCS3D01G106500.1 | Wheat | plastid | 25.82 | 28.95 |
| TraesCS3B01G122600.1 | Wheat | plastid | 25.82 | 28.95 |
| CDY59501 | Canola | plasma membrane | 24.88 | 28.8 |
| TraesCS3A01G104300.1 | Wheat | plastid | 25.82 | 28.8 |
| CDX81845 | Canola | plasma membrane | 23.0 | 27.07 |
| CDY06788 | Canola | plastid | 24.41 | 26.8 |
| TraesCS1A01G124100.1 | Wheat | plastid | 23.94 | 26.7 |
| TraesCS1D01G130300.1 | Wheat | plastid | 23.94 | 26.7 |
| TraesCS1B01G143000.1 | Wheat | plastid | 23.94 | 26.56 |
| Os05t0200280-01 | Rice | plasma membrane | 23.94 | 26.42 |
| CDY43514 | Canola | mitochondrion | 21.6 | 26.29 |
| CDX95035 | Canola | plastid | 25.35 | 25.96 |
| Os01t0196500-01 | Rice | plastid | 24.41 | 25.87 |
| CDY41253 | Canola | plastid | 10.33 | 25.58 |
| CDY25186 | Canola | plastid | 10.33 | 25.58 |
| CDX93539 | Canola | plastid | 24.41 | 25.0 |
| CDY51077 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 21.6 | 24.86 |
| CDY05662 | Canola | plastid | 8.45 | 24.66 |
| CDX72173 | Canola | plastid | 23.47 | 24.63 |
| CDY27245 | Canola | plastid | 23.47 | 24.63 |
| CDY61529 | Canola | plastid | 14.55 | 24.6 |
| CDY50022 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 21.13 | 24.19 |
| CDX70153 | Canola | plastid | 23.94 | 23.72 |
| CDY32804 | Canola | plastid | 20.66 | 23.4 |
| CDY31997 | Canola | plastid | 23.0 | 23.33 |
| CDX67633 | Canola | plastid | 23.0 | 23.22 |
| HORVU1Hr1G028520.1 | Barley | plastid | 23.47 | 23.15 |
| CDY15494 | Canola | plasma membrane | 19.25 | 23.03 |
| CDX86646 | Canola | plasma membrane | 19.25 | 23.03 |
| CDX74794 | Canola | plastid | 23.0 | 23.0 |
| CDY18870 | Canola | plastid | 22.07 | 22.49 |
| CDX80758 | Canola | plastid | 22.54 | 22.43 |
| HORVU3Hr1G018940.2 | Barley | plastid | 25.82 | 21.57 |
| CDY58876 | Canola | plastid | 22.07 | 21.56 |
| CDY17405 | Canola | plastid | 19.25 | 21.35 |
| Zm00001d037747_P001 | Maize | plastid | 18.78 | 21.28 |
| CDY07736 | Canola | plastid | 22.07 | 21.17 |
| OQU77594 | Sorghum | plastid | 19.25 | 20.92 |
| CDX81033 | Canola | plastid | 21.13 | 20.64 |
| CDY63156 | Canola | plastid | 21.13 | 20.64 |
| CDY54457 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 15.02 | 17.58 |
Protein Annotations
| EnsemblPlants:CDY55133 | EnsemblPlantsGene:GSBRNA2T00016428001 | GO:A0A078J0D2 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Prenylated_rab_accept_PRA1 | PANTHER:PTHR19317 | PANTHER:PTHR19317:SF2 | PFAM:PF03208 | ProteinID:CDY55133 | ProteinID:CDY55133.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EE7CE9 | UniProt:A0A078J0D2 | MapMan:22.8.4.3.2 | : |
Description
BnaC01g44750DPRA1 family protein [Source:UniProtKB/TrEMBL;Acc:A0A078J0D2]
Coordinates
chrLK033377:+:9434..10162
Molecular Weight (calculated)
24328.6 Da
IEP (calculated)
6.495
GRAVY (calculated)
0.427
Length
213 amino acids
Sequence
(BLAST)
(BLAST)
001: MTNYGAIQTS SHTSPSPVVD VESLSSDNNQ CTACAMPRRP WGVMFDFHSM GLPHGVSDAS SRFKTNYNYF RTNYGIFFSI NILIAIFGSL IKHPFSLIAF
101: TVLVSIYILL YYLQEDEEPI KLFCCQISDQ MIRIVKTCLF LLTMALLVVT NATCVIYGWP LVIVYVPILI HTVVRKTDDL FLDEEAATRT ETYWSSLRFH
201: VMFALFNLYF SFG
101: TVLVSIYILL YYLQEDEEPI KLFCCQISDQ MIRIVKTCLF LLTMALLVVT NATCVIYGWP LVIVYVPILI HTVVRKTDDL FLDEEAATRT ETYWSSLRFH
201: VMFALFNLYF SFG
001: MTNYGAIPTS SHPSPAIDLE YISRAKHRIK SGLATRRPWK SMFDFESMTL PHGFFDAISR IKTNLGYFRA NYAIGVLFIL FLSLLYHPTS LIVLSILVVF
101: WIFLYFLRDE PLVVFGYQID DRTVLIGLSV LTVVMLLLTH ATSNILGSLL TAAVLVLIHA AVRRSDNLFL DEEAAAVTEA SGLMSYPSS
101: WIFLYFLRDE PLVVFGYQID DRTVLIGLSV LTVVMLLLTH ATSNILGSLL TAAVLVLIHA AVRRSDNLFL DEEAAAVTEA SGLMSYPSS
Arabidopsis Description
PRA1F2PRA1 family protein F2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C889]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.