CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
extracellular 2
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	extracellular, plastid, vacuole
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	extracellular
Predotar:	plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	vacuole
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68365
CDX77855
CDX86045
CDX89402
CDX89404
CDX94426
CDX94429
CDX99131
CDY06543
CDY30926
CDY39001
CDY41713
CDY49480
CDY52126
CDY59269
CDY65544
CDY66007
CDY67905
CDY71506

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G07110.1	CDY39001	AT1G56330.1	21798944
AT5G07110.1	CDY41713	AT1G56330.1	21798944
AT5G07110.1	CDY59269	AT1G56330.1	21798944
AT5G07110.1	CDY65544	AT1G56330.1	21798944
AT5G07110.1	CDX68365	AT3G46060.1	21798944
AT5G07110.1	CDX77855	AT3G46060.1	21798944
AT5G07110.1	CDX86045	AT3G46060.1	21798944
AT5G07110.1	CDX99131	AT3G46060.1	21798944
AT5G07110.1	CDY30926	AT3G46060.1	21798944
AT5G07110.1	CDY71506	AT3G46060.1	21798944
AT5G07110.1	CDX89402	AT4G25660.1	21798944
AT5G07110.1	CDX89404	AT4G25660.1	21798944
AT5G07110.1	CDX94426	AT4G25660.1	21798944
AT5G07110.1	CDX94429	AT4G25660.1	21798944
AT5G07110.1	CDY49480	AT4G25660.1	21798944
AT5G07110.1	CDY66007	AT4G25660.1	21798944
AT5G07110.1	CDX89402	AT4G25680.1	21798944
AT5G07110.1	CDX89404	AT4G25680.1	21798944
AT5G07110.1	CDX94426	AT4G25680.1	21798944
AT5G07110.1	CDX94429	AT4G25680.1	21798944
AT5G07110.1	CDY49480	AT4G25680.1	21798944
AT5G07110.1	CDY66007	AT4G25680.1	21798944
AT5G07110.1	CDY06543	AT5G56020.1	21798944
AT5G07110.1	CDY52126	AT5G58750.1	21798944
AT5G07110.1	CDY67905	AT5G58750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005924.1-P	Field mustard	plastid	99.08	99.08
CDX81033	Canola	plastid	96.79	96.79
AT5G07110.1	Thale cress	plastid	87.61	88.43
CDX72173	Canola	plastid	50.0	53.69
CDY27245	Canola	plastid	50.0	53.69
CDX67633	Canola	plastid	51.83	53.55
CDY18870	Canola	plastid	50.92	53.11
CDX74794	Canola	plastid	51.38	52.58
CDY31997	Canola	plastid	50.46	52.38
CDX70153	Canola	plastid	51.38	52.09
CDX80758	Canola	plastid	50.0	50.93
CDY63156	Canola	plastid	49.08	49.08
CDY07736	Canola	plastid	47.71	46.85
CDY41253	Canola	plastid	16.97	43.02
CDY05662	Canola	plastid	14.22	42.47
CDY25186	Canola	plastid	16.51	41.86
CDY61529	Canola	plastid	23.85	41.27
CDY54457	Canola	endoplasmic reticulum, peroxisome, plasma membrane	34.4	41.21
CDY51735	Canola	plasma membrane	27.98	33.52
CDY37483	Canola	plasma membrane	27.98	33.52
CDY33064	Canola	cytosol, plasma membrane, plastid	27.06	31.55
CDY17405	Canola	plastid	27.06	30.73
CDY26125	Canola	cytosol, plasma membrane, plastid	26.61	30.69
CDY24050	Canola	cytosol, plasma membrane, plastid	26.15	30.48
CDX97509	Canola	plasma membrane	25.23	30.39
CDY32804	Canola	plastid	26.15	30.32
CDY51077	Canola	cytosol, endoplasmic reticulum, plasma membrane	25.69	30.27
CDY50022	Canola	cytosol, endoplasmic reticulum, plasma membrane	25.69	30.11
CDY23634	Canola	plasma membrane	24.77	29.83
CDY08228	Canola	plasma membrane	25.69	29.63
CDX86646	Canola	plasma membrane	23.85	29.21
CDY15494	Canola	plasma membrane	23.85	29.21
CDX93539	Canola	plastid	27.52	28.85
CDX95035	Canola	plastid	26.61	27.88
CDY26225	Canola	plasma membrane	23.39	27.72
CDX81845	Canola	plasma membrane	22.94	27.62
CDY43514	Canola	mitochondrion	22.02	27.43
CDY06788	Canola	plastid	24.31	27.32
CDY59501	Canola	plasma membrane	22.48	26.63
CDY37482	Canola	plastid	22.48	23.45
CDY51734	Canola	plastid	22.02	22.97
CDY51733	Canola	plastid	22.02	22.43
CDY55133	Canola	plasma membrane	21.56	22.07

Protein Annotations

EnsemblPlants:CDY58876	EnsemblPlantsGene:GSBRNA2T00025282001	GO:A0A078J4E4	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:Prenylated_rab_accept_PRA1	PANTHER:PTHR19317	PANTHER:PTHR19317:SF34	PFAM:PF03208	ProteinID:CDY58876	ProteinID:CDY58876.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EF303D	UniProt:A0A078J4E4	MapMan:22.8.4.3.2	:

Description

BnaA03g55540DPRA1 family protein [Source:UniProtKB/TrEMBL;Acc:A0A078J4E4]

Coordinates

chrLK033708:-:14062..14718

Molecular Weight (calculated)

23389.5 Da

IEP (calculated)

8.247

GRAVY (calculated)

0.468

Length

218 amino acids

Sequence
(BLAST)

001: MASPLLPTST PPDHLPTGGG DPQLLSSLRV LFSRVVSSVR HATSDARPWA ELIDRSAFSR PPSLSEAASR VRKNFSYFKS NYITLVAILL AASLLSHPFA
101: LFLLASLAAS WLFLYVFRPS DQPLVIGGRT FSDLETLGML CLCTVVVMFM TSVGSLLMST LALGMMAVAV HGAFRAPEDL FLEEQEAIGS GLFNFFNQNA
201: TNAAAAAIAT SAMSRVRA

Best Arabidopsis Sequence Match ( AT5G07110.1 )
(BLAST)

001: MASPLLPTST TPDQLPGGDP QLLSSLRVLL SRVLATVRHA SADARPWAEL VDRSAFSRPP SLSEATSRVR KNFSYFRANY ITLVAILLAA SLLTHPFALF
101: LLASLAASWL FLYFFRPADQ PLVIGGRTFS DLETLGILCL STVVVMFMTS VGSLLMSTLA VGIMGVAIHG AFRAPEDLFL EEQEAIGSGL FAFFNNNASN
201: AAAAAIATSA MSRVRV

Arabidopsis Description

PRA1B6PRA1 family protein B6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYQ4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.