Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra013908.1-P | Field mustard | cytosol | 97.55 | 97.55 |
| CDX89404 | Canola | cytosol | 97.55 | 97.55 |
| AT4G25680.1 | Thale cress | cytosol | 84.9 | 82.54 |
| AT4G25660.1 | Thale cress | cytosol | 84.08 | 80.78 |
| CDY66007 | Canola | cytosol | 82.04 | 79.13 |
| CDX89402 | Canola | cytosol | 80.41 | 78.49 |
| CDY49480 | Canola | cytosol | 80.41 | 77.87 |
| CDX94426 | Canola | cytosol | 80.0 | 77.78 |
| KRH08874 | Soybean | cytosol | 65.71 | 65.71 |
| VIT_16s0050g01050.t01 | Wine grape | cytosol | 64.49 | 65.02 |
| KRH38387 | Soybean | cytosol | 65.31 | 64.52 |
| GSMUA_AchrUn_... | Banana | cytosol | 57.14 | 56.45 |
| KRH35244 | Soybean | cytosol, peroxisome, plastid | 48.98 | 50.0 |
| Zm00001d045580_P001 | Maize | cytosol | 53.06 | 48.51 |
| EER87703 | Sorghum | cytosol | 52.65 | 48.13 |
| Os06t0107000-01 | Rice | cytosol, nucleus | 51.84 | 47.04 |
| HORVU7Hr1G002080.2 | Barley | cytosol | 37.55 | 46.7 |
| TraesCS7A01G019000.1 | Wheat | cytosol | 55.1 | 45.92 |
| PGSC0003DMT400018924 | Potato | cytosol | 39.18 | 45.28 |
| TraesCSU01G065800.1 | Wheat | cytosol | 54.69 | 45.27 |
| Solyc02g082060.1.1 | Tomato | cytosol | 38.37 | 44.13 |
| TraesCS7D01G016100.1 | Wheat | nucleus | 55.1 | 41.54 |
| CDY39951 | Canola | cytosol | 24.9 | 26.75 |
| CDY65538 | Canola | cytosol, mitochondrion | 23.67 | 26.36 |
| CDY65539 | Canola | cytosol, mitochondrion | 23.67 | 26.36 |
| CDY07077 | Canola | cytosol, mitochondrion | 23.67 | 26.36 |
| CDX88162 | Canola | cytosol, mitochondrion | 23.67 | 26.36 |
| CDX87334 | Canola | cytosol | 24.9 | 26.29 |
| CDY05475 | Canola | mitochondrion | 22.86 | 25.93 |
| CDY05376 | Canola | cytosol, mitochondrion | 22.86 | 25.93 |
| CDX79359 | Canola | cytosol | 23.67 | 25.44 |
| CDX67961 | Canola | cytosol | 23.67 | 25.44 |
| CDX75209 | Canola | nucleus | 22.86 | 24.35 |
| CDX76766 | Canola | nucleus | 22.86 | 23.73 |
| CDY62507 | Canola | nucleus, plasma membrane | 22.86 | 23.24 |
| CDY35370 | Canola | nucleus, plasma membrane | 23.27 | 23.17 |
| CDX90471 | Canola | cytosol | 18.37 | 21.03 |
| CDY09624 | Canola | cytosol | 18.37 | 20.93 |
| CDX77757 | Canola | cytosol | 20.41 | 20.58 |
| CDY64684 | Canola | cytosol | 20.41 | 20.58 |
| CDY27921 | Canola | cytosol | 18.37 | 20.27 |
| CDX76571 | Canola | cytosol | 18.37 | 19.91 |
| CDY10616 | Canola | cytosol, nucleus, peroxisome | 19.59 | 19.12 |
| CDX68806 | Canola | nucleus | 24.08 | 19.03 |
| CDY17002 | Canola | nucleus | 21.22 | 18.51 |
| CDY17812 | Canola | nucleus | 20.82 | 18.15 |
| CDY25677 | Canola | nucleus | 19.59 | 17.84 |
| CDY23657 | Canola | nucleus | 19.59 | 17.14 |
| CDY56277 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, vacuole | 23.27 | 10.4 |
Protein Annotations
| EnsemblPlants:CDX94429 | EnsemblPlantsGene:GSBRNA2T00157573001 | Gene3D:3.90.1720.30 | InterPro:PPPDE_dom | KEGG:00261+3.4.-.- | KEGG:00310+3.4.-.- |
| KEGG:00550+3.4.-.- | KEGG:00780+3.4.-.- | PANTHER:PTHR12378 | PANTHER:PTHR12378:SF9 | PFAM:PF05903 | ProteinID:CDX94429 |
| ProteinID:CDX94429.1 | SEG:seg | SMART:SM01179 | UniParc:UPI0004EB25E2 | MapMan:19.4.1.7 | : |
Description
BnaC01g17550D
Coordinates
chrLK031881:-:1113490..1114971
Molecular Weight (calculated)
27373.1 Da
IEP (calculated)
6.237
GRAVY (calculated)
-0.494
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEVVVHIYD VTNTGSDKTN NTILQINRIF KDGIGLGGIF HSAIQVYGND EWSYGYCEQG TGVFRCPSSK NPMYTYREKI VLGRTDCTIF MVNQIFRELT
101: REWPGHTYDL LSRNCNHFCD VLCDRLGVPK LPGWVNRFAQ AGDTALEVAE TTAMRLKQAK TELLSASKVA YRFLSNVTSS VTNSTNGSPQ QPGTVNNSDN
201: GNLRMQGTWL KGMLNTSKPS TSTEIENTDE DANHDSEVLQ FQHQP
101: REWPGHTYDL LSRNCNHFCD VLCDRLGVPK LPGWVNRFAQ AGDTALEVAE TTAMRLKQAK TELLSASKVA YRFLSNVTSS VTNSTNGSPQ QPGTVNNSDN
201: GNLRMQGTWL KGMLNTSKPS TSTEIENTDE DANHDSEVLQ FQHQP
001: MTEVVLHIYD VTNSGSEKTN NTIVQINRFF KDGIGLGGIF HSAIQVYGND EWSYGYCELG TGVFSCPSGK NPMYTYREKI VLGKTDCTIF MVNQMLRELS
101: REWPGHTYDL LSKNCNHFCD VLCDRLGVPK IPGWVNRFAN AGDTALEVAG NTAMRMKQAK TELVSASKVA YRFLSNVTSN VTNGSNGSPQ RPGTLNNSDS
201: GNLRLQGSWL KGLLNTAKPS TSTEIGNKDE DANHAVTNQK KQSRDSDVLL FQ
101: REWPGHTYDL LSKNCNHFCD VLCDRLGVPK IPGWVNRFAN AGDTALEVAG NTAMRMKQAK TELVSASKVA YRFLSNVTSN VTNGSNGSPQ RPGTLNNSDS
201: GNLRLQGSWL KGLLNTAKPS TSTEIGNKDE DANHAVTNQK KQSRDSDVLL FQ
Arabidopsis Description
At4g25680 [Source:UniProtKB/TrEMBL;Acc:Q9SZZ6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.