Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67961 | Canola | cytosol | 97.37 | 97.37 |
| CDY39951 | Canola | cytosol | 86.4 | 86.4 |
| AT1G80690.2 | Thale cress | cytosol | 86.84 | 85.71 |
| CDX87334 | Canola | cytosol | 86.4 | 84.91 |
| KRH44526 | Soybean | mitochondrion | 64.04 | 67.28 |
| KRH47381 | Soybean | cytosol | 62.72 | 65.3 |
| VIT_09s0002g08960.t01 | Wine grape | plasma membrane | 65.35 | 65.07 |
| PGSC0003DMT400036630 | Potato | cytosol | 61.4 | 62.78 |
| Solyc03g117100.2.1 | Tomato | cytosol | 61.4 | 62.22 |
| CDY07077 | Canola | cytosol, mitochondrion | 57.46 | 59.55 |
| CDX88162 | Canola | cytosol, mitochondrion | 57.02 | 59.09 |
| CDY65539 | Canola | cytosol, mitochondrion | 57.02 | 59.09 |
| CDY65538 | Canola | cytosol, mitochondrion | 57.02 | 59.09 |
| CDY05475 | Canola | mitochondrion | 55.26 | 58.33 |
| CDY05376 | Canola | cytosol, mitochondrion | 54.39 | 57.41 |
| GSMUA_Achr4P01900_001 | Banana | mitochondrion | 50.0 | 50.44 |
| GSMUA_Achr3P04560_001 | Banana | mitochondrion | 49.56 | 49.78 |
| Solyc06g068380.2.1 | Tomato | cytosol | 57.46 | 49.62 |
| CDX75209 | Canola | nucleus | 48.68 | 48.26 |
| CDX76766 | Canola | nucleus | 49.56 | 47.88 |
| CDY62507 | Canola | nucleus, plasma membrane | 49.56 | 46.89 |
| CDY35370 | Canola | nucleus, plasma membrane | 50.44 | 46.75 |
| PGSC0003DMT400073331 | Potato | nucleus | 57.89 | 41.77 |
| CDX90471 | Canola | cytosol | 38.16 | 40.65 |
| CDY10616 | Canola | cytosol, nucleus, peroxisome | 43.86 | 39.84 |
| CDY09624 | Canola | cytosol | 36.84 | 39.07 |
| GSMUA_Achr11P... | Banana | mitochondrion | 53.95 | 38.8 |
| CDY27921 | Canola | cytosol | 36.4 | 37.39 |
| CDY25677 | Canola | nucleus | 43.86 | 37.17 |
| CDX76571 | Canola | cytosol | 36.84 | 37.17 |
| CDX68806 | Canola | nucleus | 50.44 | 37.1 |
| CDX77757 | Canola | cytosol | 38.16 | 35.8 |
| HORVU7Hr1G029950.1 | Barley | plastid | 38.6 | 35.77 |
| CDY23657 | Canola | nucleus | 43.86 | 35.71 |
| CDY17812 | Canola | nucleus | 43.86 | 35.59 |
| CDY17002 | Canola | nucleus | 43.86 | 35.59 |
| CDY64684 | Canola | cytosol | 37.72 | 35.39 |
| Zm00001d045118_P001 | Maize | plastid | 37.28 | 35.12 |
| KXG19474 | Sorghum | plastid | 40.35 | 35.11 |
| TraesCS7D01G147600.1 | Wheat | plastid | 38.6 | 34.38 |
| TraesCS7A01G146100.1 | Wheat | plastid | 38.16 | 34.25 |
| TraesCS7B01G048600.1 | Wheat | plastid | 38.6 | 33.98 |
| Os06t0182100-00 | Rice | plastid | 38.6 | 33.59 |
| CDX94429 | Canola | cytosol | 25.44 | 23.67 |
| CDX89404 | Canola | cytosol | 25.0 | 23.27 |
| CDY49480 | Canola | cytosol | 25.44 | 22.92 |
| CDY66007 | Canola | cytosol | 25.0 | 22.44 |
| CDX94426 | Canola | cytosol | 24.56 | 22.22 |
| CDX89402 | Canola | cytosol | 24.12 | 21.91 |
| CDY56277 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, vacuole | 49.12 | 20.44 |
Protein Annotations
| EnsemblPlants:CDX79359 | EnsemblPlantsGene:GSBRNA2T00132053001 | Gene3D:3.90.1720.30 | InterPro:PPPDE_dom | KEGG:00261+3.4.-.- | KEGG:00310+3.4.-.- |
| KEGG:00550+3.4.-.- | KEGG:00780+3.4.-.- | MEROPS:C97.A04 | PANTHER:PTHR12378 | PANTHER:PTHR12378:SF17 | PFAM:PF05903 |
| ProteinID:CDX79359 | ProteinID:CDX79359.1 | SEG:seg | SMART:SM01179 | UniParc:UPI0004EF1BBD | MapMan:19.4.1.7 |
Description
BnaC06g19440D
Coordinates
chrLK031817:+:1610754..1612247
Molecular Weight (calculated)
25312.0 Da
IEP (calculated)
8.890
GRAVY (calculated)
-0.463
Length
228 amino acids
Sequence
(BLAST)
(BLAST)
001: MLCRKNSSVV DRGNVPVYLN VYDLTPINGY AYWFGLGVYH SGVEVHGIEY AFGAHEYPST GIFEGEPKQC EGFTFRKSIL IGKTDLGPLE MRATMDELAD
101: KYKGSSYNLI TNNCNHFCDD TCMKLTGNQI PSWVNRLARI GFICNCVLPA TINATKLGDN RVNQDKTCEA EANTKKLTSV SSRERSTTDT PSPSSSSPSV
201: QVRGRSRKRR PRRAMQPSST LILSSFTT
101: KYKGSSYNLI TNNCNHFCDD TCMKLTGNQI PSWVNRLARI GFICNCVLPA TINATKLGDN RVNQDKTCEA EANTKKLTSV SSRERSTTDT PSPSSSSPSV
201: QVRGRSRKRR PRRAMQPSST LILSSFTT
001: MLCRKNSSLV DRGNVPVYLN VYDLTPINGY AYWLGLGVYH SGVEVHGIEY AYGAHEYPST GIFEGEPKQC EGFTFRKSIL IGKTDLGPLE VRATMEQLAD
101: NYKGSSYNLI TKNCNHFCDE TCIKLTGNPI PSWVNRLARI GFMCNCVLPA TINATRFGNN RVNQDKSCEA ENEKKKLTSV SSRERSTIAT PSSSSSSPSV
201: QVRGRSRKRR PRALQPSSPL TLGSSSV
101: NYKGSSYNLI TKNCNHFCDE TCIKLTGNPI PSWVNRLARI GFMCNCVLPA TINATRFGNN RVNQDKSCEA ENEKKKLTSV SSRERSTIAT PSSSSSSPSV
201: QVRGRSRKRR PRALQPSSPL TLGSSSV
Arabidopsis Description
F23A5.4 protein [Source:UniProtKB/TrEMBL;Acc:Q9SAI9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.