Factsheet for PGSC0003DMT400073331

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g068380.2.1	Tomato	cytosol	78.16	93.56
PGSC0003DMT400036630	Potato	cytosol	50.32	71.3
KRH44526	Soybean	mitochondrion	45.25	65.9
KRH47381	Soybean	cytosol	45.57	65.75
VIT_09s0002g08960.t01	Wine grape	plasma membrane	46.2	63.76
Bra003580.1-P	Field mustard	cytosol	42.09	58.33
CDX67961	Canola	cytosol	42.09	58.33
AT1G80690.2	Thale cress	cytosol	42.41	58.01
CDX79359	Canola	cytosol	41.77	57.89
CDY39951	Canola	cytosol	41.46	57.46
Bra035161.1-P	Field mustard	cytosol	40.82	56.58
CDX87334	Canola	cytosol	40.82	55.6
GSMUA_Achr4P01900_001	Banana	mitochondrion	35.13	49.12
GSMUA_Achr3P04560_001	Banana	mitochondrion	34.18	47.58
PGSC0003DMT400067477	Potato	cytosol	29.11	41.63
PGSC0003DMT400039949	Potato	mitochondrion	31.01	39.68
HORVU7Hr1G029950.1	Barley	plastid	30.06	38.62
Os06t0182100-00	Rice	plastid	31.33	37.79
KXG19474	Sorghum	plastid	31.01	37.4
TraesCS7D01G147600.1	Wheat	plastid	30.06	37.11
PGSC0003DMT400002750	Potato	cytosol	26.27	37.05
TraesCS7A01G146100.1	Wheat	plastid	29.75	37.01
PGSC0003DMT400064873	Potato	nucleus	29.11	36.95
GSMUA_Achr11P...	Banana	mitochondrion	37.03	36.91
TraesCS7B01G048600.1	Wheat	plastid	29.43	35.91
Zm00001d045118_P001	Maize	plastid	27.22	35.54
PGSC0003DMT400071605	Potato	mitochondrion	29.75	32.98
PGSC0003DMT400026255	Potato	cytosol	18.35	24.47
PGSC0003DMT400018924	Potato	cytosol	14.87	22.17

Protein Annotations

EnsemblPlants:PGSC0003DMT400073331	EnsemblPlantsGene:PGSC0003DMG400028499	EntrezGene:102604322	Gene3D:3.90.1720.30	InterPro:PPPDE_dom	MEROPS:C97.A04
PANTHER:PTHR12378	PANTHER:PTHR12378:SF17	PFAM:PF05903	PGSC:PGSC0003DMG400028499	RefSeq:XP_006356237.1	SEG:seg
SMART:SM01179	UniParc:UPI000295E49B	UniProt:M1CRU5	MapMan:19.4.1.7	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400028499]

Coordinates

chr6:-:49955574..49958966

Molecular Weight (calculated)

34867.8 Da

IEP (calculated)

9.457

GRAVY (calculated)

-0.825

Length

316 amino acids

Sequence
(BLAST)

001: MQLNQSENSE FSFFTSSQCE EPEKFLCFYF KMLCCKKSVN NGRGSVPVYL NVYDLTPMNG YAYWLGLGVY HSGVQVHGVE YAFGAHEYPS TGIFEGEPKK
101: CEGFIFRKTI LIGWTEKTPR EVRRVMEELA DKYKGNAYNL ITKNCNHFCS DACVKLTNNP IPSWVNRLAR IGFVCHCIVP MSLKSTKVRH HRMEDKASEG
201: NSKKPQSSLN NQTPSSNPSG EGDKKKPQSS LNNQTPSSNP SGEGDKKKPQ SSSNKPTTSS NPSNNKKPQS SSNKTTPSNP SSVSLQSPPI AKSKSSNETR
301: SPLPPSTPLT SDSNAS

Best Arabidopsis Sequence Match ( AT1G80690.1 )
(BLAST)

001: MLCRKNSSLV DRGNVPVYLN VYDLTPINGY AYWLGLGVYH SGVEVHGIEY AYGAHEYPST GIFEGEPKQC EGFTFRKSIL IGKTDLGPLE VRATMEQLAD
101: NYKGSSYNLI TKNCNHFCDE TCIKLTGNPI PSWVNRLARI GFMCNCVLPA TINATRFGNN RVNQDKSCEA ENEKKKLTSV SSRERSTIAT PSSSSSSPSV
201: QVRGRSRKRR PRALQPSSPL TLGSSSV

Arabidopsis Description

F23A5.4 protein [Source:UniProtKB/TrEMBL;Acc:Q9SAI9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.