Factsheet for GSMUA_Achr4P01900_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 2
peroxisome 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P04560_001	Banana	mitochondrion	64.16	63.88
KRH44526	Soybean	mitochondrion	55.31	57.6
KRH47381	Soybean	cytosol	55.31	57.08
GSMUA_Achr11P...	Banana	mitochondrion	74.34	53.0
CDY39951	Canola	cytosol	52.65	52.19
Bra035161.1-P	Field mustard	cytosol	52.21	51.75
VIT_09s0002g08960.t01	Wine grape	plasma membrane	52.21	51.53
AT1G80690.2	Thale cress	cytosol	52.21	51.08
CDX87334	Canola	cytosol	52.21	50.86
Bra003580.1-P	Field mustard	cytosol	50.88	50.44
CDX67961	Canola	cytosol	50.88	50.44
CDX79359	Canola	cytosol	50.44	50.0
GSMUA_Achr7P25980_001	Banana	mitochondrion	46.02	50.0
Solyc03g117100.2.1	Tomato	cytosol	48.67	48.89
PGSC0003DMT400036630	Potato	cytosol	48.23	48.88
GSMUA_Achr4P14060_001	Banana	cytosol, plastid, vacuole	34.51	47.27
GSMUA_Achr4P07180_001	Banana	cytosol, nucleus, peroxisome	47.35	46.52
GSMUA_AchrUn_...	Banana	cytosol	41.59	43.72
GSMUA_Achr5P06500_001	Banana	cytosol, extracellular, peroxisome	40.71	42.79
Solyc06g068380.2.1	Tomato	cytosol	49.56	42.42
GSMUA_Achr4P30040_001	Banana	mitochondrion	41.59	41.96
GSMUA_Achr2P19400_001	Banana	plastid	40.27	41.94
Os06t0182100-00	Rice	plastid	46.46	40.08
GSMUA_Achr1P22650_001	Banana	mitochondrion, nucleus, plasma membrane	45.58	39.92
HORVU7Hr1G029950.1	Barley	plastid	42.92	39.43
TraesCS7A01G146100.1	Wheat	plastid	43.36	38.58
TraesCS7D01G147600.1	Wheat	plastid	43.36	38.28
TraesCS7B01G048600.1	Wheat	plastid	43.81	38.22
KXG19474	Sorghum	plastid	44.25	38.17
Zm00001d045118_P001	Maize	plastid	40.71	38.02
PGSC0003DMT400073331	Potato	nucleus	49.12	35.13
GSMUA_Achr1P00440_001	Banana	mitochondrion	39.82	32.85
GSMUA_Achr11P...	Banana	cytosol	22.57	25.0
GSMUA_Achr5P12520_001	Banana	plastid	39.82	24.66
GSMUA_Achr11P...	Banana	cytosol	25.22	23.08
GSMUA_AchrUn_...	Banana	cytosol	23.45	21.37
GSMUA_Achr8P12230_001	Banana	cytosol	23.01	21.14

Protein Annotations

EnsemblPlants:GSMUA_Achr4P01900_001	EnsemblPlants:GSMUA_Achr4T01900_001	EnsemblPlantsGene:GSMUA_Achr4G01900_001	Gene3D:3.90.1720.30	InterPro:PPPDE_dom	PANTHER:PTHR12378
PANTHER:PTHR12378:SF12	PFAM:PF05903	SEG:seg	SMART:SM01179	UniParc:UPI0002964352	UniProt:M0SKA7
MapMan:19.4.1.7	:	:	:	:	:

Description

Whole genome shotgun sequence of line PN40024, scaffold_8.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr4G01900_001]

Coordinates

chr4:-:1682310..1683575

Molecular Weight (calculated)

25267.6 Da

IEP (calculated)

10.512

GRAVY (calculated)

-0.267

Length

226 amino acids

Sequence
(BLAST)

001: MFNRGPSRKR RSGAVPVHLN VYDLTPINGY AYWFGLGVYH SGVQVHGVEY AYGAHDHPTT GIFEGEPRQC PGFVFRKSIL IGRTDLGPCE VRALMEELAA
101: KYTGDTYNLI SKNCNHFCNE ASLRLTGKPI PRWVNRLAKI GFLCNCVLPV QVAAVRQRGP EEGKDGGNGE RRSSLIVIKL LFRIARRRDL RSLLFLLFHS
201: SSFASQFSVS CARGERRAVG RPRSKA

Best Arabidopsis Sequence Match ( AT1G80690.1 )
(BLAST)

001: MLCRKNSSLV DRGNVPVYLN VYDLTPINGY AYWLGLGVYH SGVEVHGIEY AYGAHEYPST GIFEGEPKQC EGFTFRKSIL IGKTDLGPLE VRATMEQLAD
101: NYKGSSYNLI TKNCNHFCDE TCIKLTGNPI PSWVNRLARI GFMCNCVLPA TINATRFGNN RVNQDKSCEA ENEKKKLTSV SSRERSTIAT PSSSSSSPSV
201: QVRGRSRKRR PRALQPSSPL TLGSSSV

Arabidopsis Description

F23A5.4 protein [Source:UniProtKB/TrEMBL;Acc:Q9SAI9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.