Factsheet for VIT_09s0002g08960.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 4
golgi 2
mitochondrion 3
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plasma membrane
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44526	Soybean	mitochondrion	68.56	72.35
Solyc03g117100.2.1	Tomato	cytosol	70.31	71.56
PGSC0003DMT400036630	Potato	cytosol	69.43	71.3
KRH47381	Soybean	cytosol	67.69	70.78
AT1G80690.2	Thale cress	cytosol	67.69	67.1
Bra003580.1-P	Field mustard	cytosol	65.94	66.23
CDY39951	Canola	cytosol	65.94	66.23
CDX67961	Canola	cytosol	65.94	66.23
Bra035161.1-P	Field mustard	cytosol	65.5	65.79
VIT_04s0008g05960.t01	Wine grape	mitochondrion	64.63	65.49
CDX79359	Canola	cytosol	65.07	65.35
CDX87334	Canola	cytosol	65.5	64.66
Solyc06g068380.2.1	Tomato	cytosol	62.88	54.55
GSMUA_Achr3P04560_001	Banana	mitochondrion	53.28	53.74
GSMUA_Achr4P01900_001	Banana	mitochondrion	51.53	52.21
PGSC0003DMT400073331	Potato	nucleus	63.76	46.2
VIT_18s0001g12090.t01	Wine grape	mitochondrion	44.54	41.3
GSMUA_Achr11P...	Banana	mitochondrion	56.77	41.01
VIT_11s0016g04860.t01	Wine grape	cytosol, nucleus, peroxisome	36.68	39.25
HORVU7Hr1G029950.1	Barley	plastid	41.48	38.62
KXG19474	Sorghum	plastid	43.67	38.17
Zm00001d045118_P001	Maize	plastid	40.17	38.02
TraesCS7D01G147600.1	Wheat	plastid	42.36	37.89
TraesCS7A01G146100.1	Wheat	plastid	41.48	37.4
TraesCS7B01G048600.1	Wheat	plastid	41.48	36.68
Os06t0182100-00	Rice	plastid	41.92	36.64
VIT_18s0072g01100.t01	Wine grape	cytosol	19.21	31.88
VIT_03s0063g02130.t01	Wine grape	mitochondrion	45.85	31.34
VIT_16s0050g01050.t01	Wine grape	cytosol	26.2	24.69

Protein Annotations

ArrayExpress:VIT_09s0002g08960	EMBL:FN596494	EnsemblPlants:VIT_09s0002g08960.t01	EnsemblPlantsGene:VIT_09s0002g08960	EntrezGene:100249060	EntrezGene:LOC100249060
Gene3D:3.90.1720.30	InterPro:PPPDE_dom	MEROPS:C97.A04	PANTHER:PTHR12378	PANTHER:PTHR12378:SF17	PFAM:PF05903
ProteinID:CBI36475	ProteinID:CBI36475.3	RefSeq:XP_002273525	RefSeq:XP_002273525.1	SEG:seg	SMART:SM01179
UniParc:UPI00015CC40E	UniProt:D7TZG1	wikigene:100249060	wikigene:LOC100249060	MapMan:19.4.1.7	:

Description

No Description!

Coordinates

chr9:-:10510498..10514598

Molecular Weight (calculated)

25258.0 Da

IEP (calculated)

9.577

GRAVY (calculated)

-0.435

Length

229 amino acids

Sequence
(BLAST)

001: MLCRKSSTKK CRGSVPVYLN VYDLTPINGY AYWLGLGVYH SGVQVHGVEY AFGAHEYPTT GIFEGEPKQC EGFSFRKAIL IGWTDVGPEE VRGIMGDFAE
101: EYKGNAYNLI TKNCNHFCND ACIRLTGNPI PSWVNRLARI GFFCNCVLPL SINSTRISIR PNGREEKVDE VEKKKLRSPS NRFTSSSNSS SSSSLSPSGT
201: AVRSGRGRSR TRRTHPPPSP LIINSPSSA

Best Arabidopsis Sequence Match ( AT1G80690.1 )
(BLAST)

001: MLCRKNSSLV DRGNVPVYLN VYDLTPINGY AYWLGLGVYH SGVEVHGIEY AYGAHEYPST GIFEGEPKQC EGFTFRKSIL IGKTDLGPLE VRATMEQLAD
101: NYKGSSYNLI TKNCNHFCDE TCIKLTGNPI PSWVNRLARI GFMCNCVLPA TINATRFGNN RVNQDKSCEA ENEKKKLTSV SSRERSTIAT PSSSSSSPSV
201: QVRGRSRKRR PRALQPSSPL TLGSSSV

Arabidopsis Description

F23A5.4 protein [Source:UniProtKB/TrEMBL;Acc:Q9SAI9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.