Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX87334 | Canola | cytosol | 99.12 | 97.41 |
| AT1G80690.2 | Thale cress | cytosol | 90.79 | 89.61 |
| CDX67961 | Canola | cytosol | 86.4 | 86.4 |
| CDX79359 | Canola | cytosol | 86.4 | 86.4 |
| KRH44526 | Soybean | mitochondrion | 66.67 | 70.05 |
| KRH47381 | Soybean | cytosol | 64.47 | 67.12 |
| VIT_09s0002g08960.t01 | Wine grape | plasma membrane | 66.23 | 65.94 |
| PGSC0003DMT400036630 | Potato | cytosol | 63.16 | 64.57 |
| Solyc03g117100.2.1 | Tomato | cytosol | 63.16 | 64.0 |
| CDX88162 | Canola | cytosol, mitochondrion | 57.89 | 60.0 |
| CDY65539 | Canola | cytosol, mitochondrion | 57.89 | 60.0 |
| CDY65538 | Canola | cytosol, mitochondrion | 57.89 | 60.0 |
| CDY07077 | Canola | cytosol, mitochondrion | 57.46 | 59.55 |
| CDY05475 | Canola | mitochondrion | 55.26 | 58.33 |
| CDY05376 | Canola | cytosol, mitochondrion | 54.39 | 57.41 |
| GSMUA_Achr4P01900_001 | Banana | mitochondrion | 52.19 | 52.65 |
| GSMUA_Achr3P04560_001 | Banana | mitochondrion | 50.88 | 51.1 |
| Solyc06g068380.2.1 | Tomato | cytosol | 57.46 | 49.62 |
| CDX76766 | Canola | nucleus | 51.32 | 49.58 |
| CDY35370 | Canola | nucleus, plasma membrane | 52.63 | 48.78 |
| CDY62507 | Canola | nucleus, plasma membrane | 51.32 | 48.55 |
| CDX75209 | Canola | nucleus | 48.68 | 48.26 |
| CDX90471 | Canola | cytosol | 39.91 | 42.52 |
| PGSC0003DMT400073331 | Potato | nucleus | 57.46 | 41.46 |
| CDY09624 | Canola | cytosol | 38.6 | 40.93 |
| GSMUA_Achr11P... | Banana | mitochondrion | 56.58 | 40.69 |
| CDY10616 | Canola | cytosol, nucleus, peroxisome | 44.74 | 40.64 |
| CDX76571 | Canola | cytosol | 38.6 | 38.94 |
| CDY27921 | Canola | cytosol | 37.72 | 38.74 |
| CDY25677 | Canola | nucleus | 44.74 | 37.92 |
| CDX77757 | Canola | cytosol | 40.35 | 37.86 |
| CDY64684 | Canola | cytosol | 39.91 | 37.45 |
| CDX68806 | Canola | nucleus | 50.44 | 37.1 |
| CDY23657 | Canola | nucleus | 44.74 | 36.43 |
| CDY17812 | Canola | nucleus | 44.74 | 36.3 |
| CDY17002 | Canola | nucleus | 44.74 | 36.3 |
| Zm00001d045118_P001 | Maize | plastid | 38.16 | 35.95 |
| HORVU7Hr1G029950.1 | Barley | plastid | 38.6 | 35.77 |
| KXG19474 | Sorghum | plastid | 40.79 | 35.5 |
| Os06t0182100-00 | Rice | plastid | 39.91 | 34.73 |
| TraesCS7D01G147600.1 | Wheat | plastid | 38.6 | 34.38 |
| TraesCS7A01G146100.1 | Wheat | plastid | 38.16 | 34.25 |
| TraesCS7B01G048600.1 | Wheat | plastid | 38.6 | 33.98 |
| CDY49480 | Canola | cytosol | 27.63 | 24.9 |
| CDX89404 | Canola | cytosol | 26.75 | 24.9 |
| CDX94429 | Canola | cytosol | 26.75 | 24.9 |
| CDX94426 | Canola | cytosol | 27.19 | 24.6 |
| CDY66007 | Canola | cytosol | 27.19 | 24.41 |
| CDX89402 | Canola | cytosol | 26.75 | 24.3 |
| CDY56277 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, vacuole | 52.19 | 21.72 |
Protein Annotations
| EnsemblPlants:CDY39951 | EnsemblPlantsGene:GSBRNA2T00068830001 | Gene3D:3.90.1720.30 | InterPro:PPPDE_dom | KEGG:00261+3.4.-.- | KEGG:00310+3.4.-.- |
| KEGG:00550+3.4.-.- | KEGG:00780+3.4.-.- | MEROPS:C97.A04 | PANTHER:PTHR12378 | PANTHER:PTHR12378:SF17 | PFAM:PF05903 |
| ProteinID:CDY39951 | ProteinID:CDY39951.1 | SEG:seg | SMART:SM01179 | UniParc:UPI0004EEDEF5 | UniProt:A0A078HQN8 |
| MapMan:19.4.1.7 | : | : | : | : | : |
Description
BnaC06g40290DBnaC06g40290D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HQN8]
Coordinates
chrLK032461:+:53560..54910
Molecular Weight (calculated)
25109.9 Da
IEP (calculated)
8.713
GRAVY (calculated)
-0.383
Length
228 amino acids
Sequence
(BLAST)
(BLAST)
001: MLCRKNSSVV DRGNVPVYLN VYDLTPINGY AYWFGLGVYH SGVEVHGIEY AYGAHEYPST GIFEGEPKQC EGFTFRKSIL IGKTDLGPLE VRATMEELSE
101: IYKGSSYNLI TKNCNHFCDE ICIKLTGNPI PSWVNRLARI GFMCNCVLPA TINATKLGNN RINQDKSCEA ETEKKKLTSG SSRESSTTID TPSSSSSSPS
201: VQVRGRSRKR RPRAMHPSSP VILGSSAV
101: IYKGSSYNLI TKNCNHFCDE ICIKLTGNPI PSWVNRLARI GFMCNCVLPA TINATKLGNN RINQDKSCEA ETEKKKLTSG SSRESSTTID TPSSSSSSPS
201: VQVRGRSRKR RPRAMHPSSP VILGSSAV
001: MLCRKNSSLV DRGNVPVYLN VYDLTPINGY AYWLGLGVYH SGVEVHGIEY AYGAHEYPST GIFEGEPKQC EGFTFRKSIL IGKTDLGPLE VRATMEQLAD
101: NYKGSSYNLI TKNCNHFCDE TCIKLTGNPI PSWVNRLARI GFMCNCVLPA TINATRFGNN RVNQDKSCEA ENEKKKLTSV SSRERSTIAT PSSSSSSPSV
201: QVRGRSRKRR PRALQPSSPL TLGSSSV
101: NYKGSSYNLI TKNCNHFCDE TCIKLTGNPI PSWVNRLARI GFMCNCVLPA TINATRFGNN RVNQDKSCEA ENEKKKLTSV SSRERSTIAT PSSSSSSPSV
201: QVRGRSRKRR PRALQPSSPL TLGSSSV
Arabidopsis Description
F23A5.4 protein [Source:UniProtKB/TrEMBL;Acc:Q9SAI9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.