Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra013908.1-P | Field mustard | cytosol | 99.18 | 99.18 |
| CDX94429 | Canola | cytosol | 97.55 | 97.55 |
| AT4G25680.1 | Thale cress | cytosol | 84.9 | 82.54 |
| AT4G25660.1 | Thale cress | cytosol | 84.9 | 81.57 |
| CDX89402 | Canola | cytosol | 81.63 | 79.68 |
| CDY66007 | Canola | cytosol | 82.04 | 79.13 |
| CDX94426 | Canola | cytosol | 81.22 | 78.97 |
| CDY49480 | Canola | cytosol | 80.41 | 77.87 |
| KRH08874 | Soybean | cytosol | 65.31 | 65.31 |
| VIT_16s0050g01050.t01 | Wine grape | cytosol | 64.49 | 65.02 |
| KRH38387 | Soybean | cytosol | 64.9 | 64.11 |
| GSMUA_AchrUn_... | Banana | cytosol | 57.55 | 56.85 |
| KRH35244 | Soybean | cytosol, peroxisome, plastid | 48.57 | 49.58 |
| Zm00001d045580_P001 | Maize | cytosol | 53.06 | 48.51 |
| EER87703 | Sorghum | cytosol | 52.65 | 48.13 |
| Os06t0107000-01 | Rice | cytosol, nucleus | 52.24 | 47.41 |
| HORVU7Hr1G002080.2 | Barley | cytosol | 37.55 | 46.7 |
| TraesCS7A01G019000.1 | Wheat | cytosol | 55.1 | 45.92 |
| PGSC0003DMT400018924 | Potato | cytosol | 39.18 | 45.28 |
| TraesCSU01G065800.1 | Wheat | cytosol | 54.69 | 45.27 |
| Solyc02g082060.1.1 | Tomato | cytosol | 38.37 | 44.13 |
| TraesCS7D01G016100.1 | Wheat | nucleus | 55.1 | 41.54 |
| CDY39951 | Canola | cytosol | 24.9 | 26.75 |
| CDY65538 | Canola | cytosol, mitochondrion | 23.67 | 26.36 |
| CDY65539 | Canola | cytosol, mitochondrion | 23.67 | 26.36 |
| CDY07077 | Canola | cytosol, mitochondrion | 23.67 | 26.36 |
| CDX88162 | Canola | cytosol, mitochondrion | 23.67 | 26.36 |
| CDY05475 | Canola | mitochondrion | 22.86 | 25.93 |
| CDY05376 | Canola | cytosol, mitochondrion | 22.86 | 25.93 |
| CDX87334 | Canola | cytosol | 24.49 | 25.86 |
| CDX79359 | Canola | cytosol | 23.27 | 25.0 |
| CDX67961 | Canola | cytosol | 23.27 | 25.0 |
| CDX75209 | Canola | nucleus | 23.27 | 24.78 |
| CDX76766 | Canola | nucleus | 23.27 | 24.15 |
| CDY62507 | Canola | nucleus, plasma membrane | 23.27 | 23.65 |
| CDY35370 | Canola | nucleus, plasma membrane | 23.67 | 23.58 |
| CDX90471 | Canola | cytosol | 18.37 | 21.03 |
| CDY09624 | Canola | cytosol | 18.37 | 20.93 |
| CDY27921 | Canola | cytosol | 18.37 | 20.27 |
| CDX77757 | Canola | cytosol | 20.0 | 20.16 |
| CDY64684 | Canola | cytosol | 20.0 | 20.16 |
| CDX76571 | Canola | cytosol | 18.37 | 19.91 |
| CDY10616 | Canola | cytosol, nucleus, peroxisome | 19.59 | 19.12 |
| CDX68806 | Canola | nucleus | 24.08 | 19.03 |
| CDY17002 | Canola | nucleus | 20.82 | 18.15 |
| CDY25677 | Canola | nucleus | 19.59 | 17.84 |
| CDY17812 | Canola | nucleus | 20.41 | 17.79 |
| CDY23657 | Canola | nucleus | 19.59 | 17.14 |
| CDY56277 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, vacuole | 23.67 | 10.58 |
Protein Annotations
| EnsemblPlants:CDX89404 | EnsemblPlantsGene:GSBRNA2T00149643001 | Gene3D:3.90.1720.30 | InterPro:PPPDE_dom | KEGG:00261+3.4.-.- | KEGG:00310+3.4.-.- |
| KEGG:00550+3.4.-.- | KEGG:00780+3.4.-.- | PANTHER:PTHR12378 | PANTHER:PTHR12378:SF9 | PFAM:PF05903 | ProteinID:CDX89404 |
| ProteinID:CDX89404.1 | SEG:seg | SMART:SM01179 | UniParc:UPI0004EE9AC6 | MapMan:19.4.1.7 | : |
Description
BnaA01g14890D
Coordinates
chrLK031858:-:1437589..1438979
Molecular Weight (calculated)
27402.1 Da
IEP (calculated)
6.504
GRAVY (calculated)
-0.507
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEVVVHIYD VTNTGSDKTN NTILQINRIF KDGIGLGGIF HSAIQVYGND EWSYGYCEQG TGVFRCPSSK NPMYTYREKI VLGRTDCTIF MVNQIFRELT
101: REWPGHTYDL LSRNCNHFCD VLCDRLGVPK LPGWVNRFAH AGDTALEVAE TTAMRLKQAK TELLSASKVA YRFLSNVTSS VTNSSNGSPQ QPGTVNNSDN
201: VNSRMQGTWL KGMLNTSKPS TSTEIENKDE DANHDSEVLQ FQQQP
101: REWPGHTYDL LSRNCNHFCD VLCDRLGVPK LPGWVNRFAH AGDTALEVAE TTAMRLKQAK TELLSASKVA YRFLSNVTSS VTNSSNGSPQ QPGTVNNSDN
201: VNSRMQGTWL KGMLNTSKPS TSTEIENKDE DANHDSEVLQ FQQQP
001: MAEVVLHIYD VTNSGSEKTN NTIVQINRFF KDGIGLGGIF HSAIQVYGND EWSYGYCEQG TGVFSCPSGK NPMYTYREKI VLGKTDCTIF MVNQILRELS
101: REWPGHTYDL LSKNCNHFCD VLCDRLGVPK IPGWVNRFAH AGDTALEVAG NTAMRVKQAK TELVSASKVA YRFLSNVTSN ITNGSNGSSG SPQRPGTLNN
201: SDNGSFRLQG SWLKGILNTA KPSTSTEIGN KEEDTNHTIT NQKKQNRDSD VLLFQ
101: REWPGHTYDL LSKNCNHFCD VLCDRLGVPK IPGWVNRFAH AGDTALEVAG NTAMRVKQAK TELVSASKVA YRFLSNVTSN ITNGSNGSSG SPQRPGTLNN
201: SDNGSFRLQG SWLKGILNTA KPSTSTEIGN KEEDTNHTIT NQKKQNRDSD VLLFQ
Arabidopsis Description
At4g25660 [Source:UniProtKB/TrEMBL;Acc:Q9SZZ4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.