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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • mitochondrion 1
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX68365
CDX73855
CDX77855
CDX86045
CDX89402
CDX89404
CDX94426
CDX94429
CDX99131
CDX99430
CDY17034
CDY23649
CDY30926
CDY47592
CDY47919
CDY49480
CDY52126
CDY56593
CDY62557
CDY64916
CDY66007
CDY67628
CDY67905
CDY71506

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G17720.1 CDY17034 AT1G47260.1 21798944
AT4G17720.1 CDY23649 AT1G47260.1 21798944
AT4G17720.1 CDY47592 AT1G47260.1 21798944
AT4G17720.1 CDY67628 AT1G47260.1 21798944
AT4G17720.1 CDX73855 AT3G11730.1 21798944
AT4G17720.1 CDY47919 AT3G11730.1 21798944
AT4G17720.1 CDY56593 AT3G11730.1 21798944
AT4G17720.1 CDX68365 AT3G46060.1 21798944
AT4G17720.1 CDX77855 AT3G46060.1 21798944
AT4G17720.1 CDX86045 AT3G46060.1 21798944
AT4G17720.1 CDX99131 AT3G46060.1 21798944
AT4G17720.1 CDY30926 AT3G46060.1 21798944
AT4G17720.1 CDY71506 AT3G46060.1 21798944
AT4G17720.1 CDX99430 AT4G18800.1 21798944
AT4G17720.1 CDY62557 AT4G18800.1 21798944
AT4G17720.1 CDY64916 AT4G18800.1 21798944
AT4G17720.1 CDX89402 AT4G25680.1 21798944
AT4G17720.1 CDX89404 AT4G25680.1 21798944
AT4G17720.1 CDX94426 AT4G25680.1 21798944
AT4G17720.1 CDX94429 AT4G25680.1 21798944
AT4G17720.1 CDY49480 AT4G25680.1 21798944
AT4G17720.1 CDY66007 AT4G25680.1 21798944
AT4G17720.1 CDY52126 AT5G58750.1 21798944
AT4G17720.1 CDY67905 AT5G58750.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX90453 Canola cytosol 96.7 94.82
Bra012646.1-P Field mustard nucleus 96.37 93.59
CDY01476 Canola cytosol 43.23 91.61
CDY01473 Canola nucleus 58.75 89.9
AT4G17720.1 Thale cress cytosol, nucleus, plastid 90.76 87.86
CDX78795 Canola nucleus 86.8 86.8
CDY60787 Canola nucleus 86.8 86.8
VIT_02s0012g01860.t01 Wine grape cytosol 65.68 70.57
KRH39571 Soybean nucleus 63.7 68.93
GSMUA_Achr9P23330_001 Banana nucleus, peroxisome, plastid 55.45 68.85
KRH74377 Soybean endoplasmic reticulum 63.37 68.82
Solyc08g076530.2.1 Tomato plastid 63.37 68.33
PGSC0003DMT400038377 Potato cytosol 63.04 67.97
CDX90455 Canola cytosol 46.53 67.79
GSMUA_AchrUn_... Banana cytosol, extracellular, nucleus 61.06 66.55
CDX77703 Canola endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole 72.28 65.37
CDY33486 Canola endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 71.62 65.17
EER89059 Sorghum cytosol 54.13 60.97
Os06t0112400-01 Rice plasma membrane 51.82 60.15
HORVU7Hr1G003710.1 Barley cytosol 51.49 59.32
TraesCS4A01G458600.1 Wheat cytosol, nucleus, plastid 51.49 58.65
TraesCS7D01G027100.1 Wheat plastid 51.49 58.65
Zm00001d045559_P002 Maize cytosol, endoplasmic reticulum, nucleus 53.8 58.63
CDX70721 Canola cytosol 48.51 56.32
CDX78713 Canola cytosol 48.51 56.32
Os04t0594400-01 Rice plasma membrane 56.11 54.14
GSMUA_Achr8P14700_001 Banana plastid 54.46 54.1
GSMUA_Achr5P14070_001 Banana cytosol, nucleus, plastid 49.51 53.96
Zm00001d026206_P001 Maize cytosol, nucleus, plastid 55.78 53.82
CDX69415 Canola cytosol 45.87 53.46
Zm00001d002475_P001 Maize extracellular 54.79 52.87
EES12769 Sorghum cytosol 54.79 52.87
TraesCS2D01G444000.1 Wheat extracellular 54.46 52.38
TraesCS2B01G466100.1 Wheat extracellular 54.13 51.73
TraesCS2A01G445100.1 Wheat extracellular 53.8 51.42
TraesCS7A01G030900.2 Wheat plastid 51.49 49.52
Zm00001d026150_P001 Maize cytosol 38.28 48.33
Zm00001d031612_P001 Maize cytosol 38.28 48.33
Zm00001d035920_P002 Maize extracellular, vacuole 54.13 47.4
Zm00001d054082_P001 Maize cytosol 43.56 46.64
CDY16974 Canola plastid 46.53 44.34
CDY01872 Canola cytosol, plastid 41.25 44.01
CDX85485 Canola plastid 45.54 43.81
Os04t0624800-01 Rice nucleus 51.49 41.49
Zm00001d046992_P001 Maize cytosol 44.55 41.28
TraesCS6D01G249000.1 Wheat nucleus, plastid 51.82 41.1
CDY38176 Canola cytosol 35.64 41.06
CDY25131 Canola cytosol, mitochondrion, nucleus, plastid 35.31 40.23
TraesCS6A01G265600.1 Wheat extracellular 52.15 39.8
Zm00001d031493_P001 Maize cytosol, mitochondrion, plastid 42.57 39.69
TraesCS6B01G292900.1 Wheat endoplasmic reticulum, extracellular 51.49 39.29
OQU85574 Sorghum nucleus 50.49 39.13
CDX96860 Canola nucleus 30.36 37.7
CDY62016 Canola nucleus 29.04 37.61
CDY49093 Canola cytosol 30.36 37.55
CDX84035 Canola nucleus 29.7 36.89
Zm00001d051524_P002 Maize nucleus 48.84 36.72
CDY60084 Canola cytosol, nucleus, plastid 8.91 35.53
Zm00001d014267_P001 Maize nucleus 47.85 34.36
CDY38083 Canola nucleus 45.54 32.94
Zm00001d046215_P001 Maize cytosol 34.32 32.5
CDX91958 Canola cytosol, nucleus, plastid 25.08 30.16
CDX74287 Canola cytosol 25.08 30.16
Protein Annotations
Gene3D:3.30.70.330MapMan:35.1GO:A0A078EJZ2EnsemblPlants:CDY01477ProteinID:CDY01477ProteinID:CDY01477.1
ncoils:CoilGO:GO:0003674GO:GO:0003676GO:GO:0005488EnsemblPlantsGene:GSBRNA2T00112483001InterPro:IPR000504
InterPro:IPR012677InterPro:Nucleotide-bd_a/b_plait_sfPFAM:PF00076PFscan:PS50102PANTHER:PTHR44136PANTHER:PTHR44136:SF5
InterPro:RBD_domain_sfInterPro:RRM_domSMART:SM00360SUPFAM:SSF54928UniParc:UPI0004EEEE2ESEG:seg
Description
BnaC07g34670D
Coordinates
chrLK031927:-:38453..40802
Molecular Weight (calculated)
32685.4 Da
IEP (calculated)
5.783
GRAVY (calculated)
-0.517
Length
303 amino acids
Sequence
(BLAST)
001: MTTVKVSNVS LGATDRDLKE FFSFSGDILY LETQSETERS KLAYVTFKDL QGAETAVLLS GATIVDSSVI VTMAPDYQLS PEALASLEPK EISKSPRAGD
101: SVLRKAEDVV SSMLAKGFIL GKDAIAKAKS VDEKHQLTST ASAKVASLDK KLGFTDKINT GTVVVGDKVR EVDHKYQVSE KTKSAIAAAE QTVSNAGSAI
201: MKNRYVLTGA TWVTGAFNKV AKAAEEVGQK AKEKVGMAEE EDKRKVVDEF ARVHLSESPK APSSKEDDVH EPKRSESPEP KESEHQEPQQ QQQSSQPVGP
301: AQP
Best Arabidopsis Sequence Match ( AT4G17720.1 )
(BLAST)
001: MTMTTVKVSN VSLGATDRDL KEFFSFSGDI LYLETQSETE RTKLAYVTFK DLQGAETAVL LSGATIVDSS VIVSMAPDYQ LSPEALASLE PKDSNKSPKA
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP
Arabidopsis Description
Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8LA96]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.