Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039914.1-P | Field mustard | cytosol | 99.24 | 99.24 |
| CDY25131 | Canola | cytosol, mitochondrion, nucleus, plastid | 98.1 | 96.99 |
| AT5G32450.1 | Thale cress | cytosol | 83.27 | 82.02 |
| VIT_08s0032g00290.t01 | Wine grape | cytosol | 69.2 | 67.91 |
| GSMUA_Achr4P10680_001 | Banana | cytosol | 67.3 | 66.79 |
| Solyc10g076890.1.1 | Tomato | cytosol | 69.2 | 66.67 |
| PGSC0003DMT400018578 | Potato | cytosol | 68.82 | 65.82 |
| CDY60084 | Canola | cytosol, nucleus, plastid | 19.01 | 65.79 |
| KRH06674 | Soybean | cytosol | 68.06 | 64.86 |
| GSMUA_Achr8P04640_001 | Banana | cytosol | 64.64 | 63.91 |
| EER93456 | Sorghum | cytosol | 66.54 | 63.41 |
| TraesCS5B01G392900.1 | Wheat | cytosol | 64.26 | 62.13 |
| KRG94865 | Soybean | cytosol | 58.17 | 61.94 |
| Os03t0748900-01 | Rice | cytosol | 64.64 | 61.15 |
| TraesCS5A01G387800.1 | Wheat | cytosol | 63.12 | 61.03 |
| Zm00001d013271_P003 | Maize | cytosol | 65.02 | 60.85 |
| TraesCS5D01G397700.2 | Wheat | cytosol | 63.5 | 60.29 |
| HORVU5Hr1G095000.1 | Barley | nucleus | 63.5 | 45.26 |
| CDY01476 | Canola | cytosol | 23.95 | 44.06 |
| GSMUA_AchrUn_... | Banana | cytosol | 25.48 | 41.61 |
| CDX69415 | Canola | cytosol | 40.68 | 41.15 |
| CDX70721 | Canola | cytosol | 39.92 | 40.23 |
| CDX78713 | Canola | cytosol | 39.54 | 39.85 |
| CDY49093 | Canola | cytosol | 34.98 | 37.55 |
| CDX96860 | Canola | nucleus | 34.6 | 37.3 |
| CDX78795 | Canola | nucleus | 42.21 | 36.63 |
| CDX84035 | Canola | nucleus | 33.84 | 36.48 |
| CDY62016 | Canola | nucleus | 32.32 | 36.32 |
| CDY60787 | Canola | nucleus | 41.83 | 36.3 |
| CDY01477 | Canola | cytosol | 41.06 | 35.64 |
| CDX90453 | Canola | cytosol | 41.44 | 35.28 |
| CDY01872 | Canola | cytosol, plastid | 36.5 | 33.8 |
| CDX85485 | Canola | plastid | 40.3 | 33.65 |
| CDY16974 | Canola | plastid | 40.68 | 33.65 |
| CDY33486 | Canola | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 41.06 | 32.43 |
| CDX77703 | Canola | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 41.06 | 32.24 |
| CDX90455 | Canola | cytosol | 25.1 | 31.73 |
| CDY01473 | Canola | nucleus | 22.81 | 30.3 |
| Zm00001d033453_P001 | Maize | cytosol | 37.64 | 29.46 |
| CDX91958 | Canola | cytosol, nucleus, plastid | 28.14 | 29.37 |
| CDX74287 | Canola | cytosol | 28.14 | 29.37 |
| CDY38083 | Canola | nucleus | 39.92 | 25.06 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078HKL3 | UniProt:A0A078HKL3 | EnsemblPlants:CDY38176 | ProteinID:CDY38176 |
| ProteinID:CDY38176.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00065482001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44136 |
| PANTHER:PTHR44136:SF3 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EF07FD |
Description
BnaA07g02070DBnaA07g02070D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HKL3]
Coordinates
chrLK032417:+:314141..316030
Molecular Weight (calculated)
28466.8 Da
IEP (calculated)
9.972
GRAVY (calculated)
-0.248
Length
263 amino acids
Sequence
(BLAST)
(BLAST)
001: MQQQTRSVRV ENVSDLATER EIHEFFSFSG DIDHIEILKD ASEQSRVAFV TFTEPKALEI ALLLSGATIV DKIVTITPAE NYVPRRETMQ QVVENTIPPT
101: PTRQTADGNG GRAYVSKAQD VMATVLAKGS ALGQDAVNKA KAFDELHQLR ANASAKVSSF DKRVRLSEKF NVGISVVNEK VKSVDQRLQV SDKTMAAIFA
201: AEKKLNDTGS AVKSSRYVTA GAAWFSGAFS KVARAGQLAG SKTKEKFNLA VSNIASKDTP IAV
101: PTRQTADGNG GRAYVSKAQD VMATVLAKGS ALGQDAVNKA KAFDELHQLR ANASAKVSSF DKRVRLSEKF NVGISVVNEK VKSVDQRLQV SDKTMAAIFA
201: AEKKLNDTGS AVKSSRYVTA GAAWFSGAFS KVARAGQLAG SKTKEKFNLA VSNIASKDTP IAV
001: MQTTRSVQVN NVSDLATERE IHEFFSFSGD IEHIEIQKEF GQSRIAFVTF TDPKALEIAL LLSGATIVDQ IVTITRAENY VQRRETQEVR MLDNAMPLGL
101: QESTTQTKTN MDGNSRAYVS KAQDVVATVL AKGSALGQDA VNKAKAFDEK HQLRANASAK VSSFDKRVGL TEKLSVGISA VNEKVKSVDQ KLQVSDKTMA
201: AIFAAERKLN DTGSAVKSSR YVTAGAAWFS GAFSKVARVG QVAGSKTKEK FNLAVSNMSS KDTPIAV
101: QESTTQTKTN MDGNSRAYVS KAQDVVATVL AKGSALGQDA VNKAKAFDEK HQLRANASAK VSSFDKRVGL TEKLSVGISA VNEKVKSVDQ KLQVSDKTMA
201: AIFAAERKLN DTGSAVKSSR YVTAGAAWFS GAFSKVARVG QVAGSKTKEK FNLAVSNMSS KDTPIAV
Arabidopsis Description
Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8L9M9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.