Factsheet for PGSC0003DMT400018578

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g076890.1.1	Tomato	cytosol	97.09	97.8
VIT_08s0032g00290.t01	Wine grape	cytosol	75.27	77.24
AT5G32450.1	Thale cress	cytosol	69.09	71.16
KRH06674	Soybean	cytosol	70.91	70.65
KRG94865	Soybean	cytosol	63.27	70.45
GSMUA_Achr4P10680_001	Banana	cytosol	66.55	69.06
CDY38176	Canola	cytosol	65.82	68.82
EER93456	Sorghum	cytosol	68.73	68.48
Bra039914.1-P	Field mustard	cytosol	65.09	68.06
CDY25131	Canola	cytosol, mitochondrion, nucleus, plastid	65.09	67.29
Zm00001d013271_P003	Maize	cytosol	67.64	66.19
TraesCS5B01G392900.1	Wheat	cytosol	65.45	66.18
GSMUA_Achr8P04640_001	Banana	cytosol	64.0	66.17
Os03t0748900-01	Rice	cytosol	65.82	65.11
TraesCS5A01G387800.1	Wheat	cytosol	63.64	64.34
TraesCS5D01G397700.2	Wheat	cytosol	63.64	63.18
CDY60084	Canola	cytosol, nucleus, plastid	15.27	55.26
HORVU5Hr1G095000.1	Barley	nucleus	64.73	48.24
PGSC0003DMT400008196	Potato	cytosol, mitochondrion, nucleus	44.36	43.88
GSMUA_AchrUn_...	Banana	cytosol	25.09	42.86
PGSC0003DMT400038377	Potato	cytosol	43.64	42.7
PGSC0003DMT400065786	Potato	cytosol, nucleus, plastid	35.64	40.0
PGSC0003DMT400017749	Potato	cytosol	32.36	34.9
PGSC0003DMT400069547	Potato	nucleus	41.45	33.53
Zm00001d033453_P001	Maize	cytosol	37.45	30.65

Protein Annotations

EntrezGene:102595744	Gene3D:3.30.70.330	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	UniProt:M1AAW4	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
EnsemblPlantsGene:PGSC0003DMG402007209	PGSC:PGSC0003DMG402007209	EnsemblPlants:PGSC0003DMT400018578	PFscan:PS50102	PANTHER:PTHR44136	PANTHER:PTHR44136:SF3
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000295770E	InterPro:Vip1-like_RRM_plant

Description

RNA-binding region RNP-1 (RNA recognition motif) [Source:PGSC_GENE;Acc:PGSC0003DMG402007209]

Coordinates

chr10:-:59670442..59675698

Molecular Weight (calculated)

29880.4 Da

IEP (calculated)

10.040

GRAVY (calculated)

-0.292

Length

275 amino acids

Sequence
(BLAST)

001: MYFQEVRTVR VGNVSDLAAE REVREFFSFS GEIEHIEIRR EQGQSKTAFV TFKDPKALEI ALLLSGATIV DQIVNITQEE DYVPSSETRE VRLVDNAVNV
101: AGESSSPLAE AKPTSPSNGR VNGKVYISKA QDVVSNVLAK GSAIRQDAMN KAKAFDEKHQ LRATASARVI SFDRRVGLTE KLTVGISVVN EKVKSVDQRL
201: QVSDKTMAAV MAAERKLNDT GSAVKSSRYV NAGAAWLNGA FSKVAKAGQV AGTKTREKWN FALSNLTAKD PSIVA

Best Arabidopsis Sequence Match ( AT5G32450.1 )
(BLAST)

001: MQTTRSVQVN NVSDLATERE IHEFFSFSGD IEHIEIQKEF GQSRIAFVTF TDPKALEIAL LLSGATIVDQ IVTITRAENY VQRRETQEVR MLDNAMPLGL
101: QESTTQTKTN MDGNSRAYVS KAQDVVATVL AKGSALGQDA VNKAKAFDEK HQLRANASAK VSSFDKRVGL TEKLSVGISA VNEKVKSVDQ KLQVSDKTMA
201: AIFAAERKLN DTGSAVKSSR YVTAGAAWFS GAFSKVARVG QVAGSKTKEK FNLAVSNMSS KDTPIAV

Arabidopsis Description

Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8L9M9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.