Factsheet for TraesCS5D01G397700.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G392900.1	Wheat	cytosol	94.22	95.96
TraesCS5A01G387800.1	Wheat	cytosol	93.86	95.59
Os03t0748900-01	Rice	cytosol	84.84	84.53
EER93456	Sorghum	cytosol	80.87	81.16
Zm00001d013271_P003	Maize	cytosol	79.78	78.65
HORVU5Hr1G095000.1	Barley	nucleus	93.14	69.92
GSMUA_Achr4P10680_001	Banana	cytosol	64.98	67.92
VIT_08s0032g00290.t01	Wine grape	cytosol	63.18	65.3
GSMUA_Achr8P04640_001	Banana	cytosol	61.73	64.29
Solyc10g076890.1.1	Tomato	cytosol	63.18	64.1
PGSC0003DMT400018578	Potato	cytosol	63.18	63.64
Bra039914.1-P	Field mustard	cytosol	60.29	63.5
CDY38176	Canola	cytosol	60.29	63.5
KRH06674	Soybean	cytosol	62.09	62.32
CDY25131	Canola	cytosol, mitochondrion, nucleus, plastid	59.57	62.03
KRG94865	Soybean	cytosol	54.15	60.73
AT5G32450.1	Thale cress	cytosol	58.12	60.3
CDY60084	Canola	cytosol, nucleus, plastid	13.36	48.68
GSMUA_AchrUn_...	Banana	cytosol	25.99	44.72
TraesCS7D01G027100.1	Wheat	plastid	41.52	43.23
TraesCS4D01G049200.1	Wheat	cytosol, nucleus, plastid	40.43	39.44
TraesCS2D01G444000.1	Wheat	extracellular	40.79	35.87
Zm00001d033453_P001	Maize	cytosol	42.96	35.42
TraesCS2D01G523400.1	Wheat	nucleus	31.05	35.25
TraesCS6D01G249000.1	Wheat	nucleus, plastid	37.18	26.96

Protein Annotations

EnsemblPlants:TraesCS5D01G397700.2	EnsemblPlantsGene:TraesCS5D01G397700	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom	PANTHER:PTHR32343
PANTHER:PTHR32343:SF9	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360	SUPFAM:SSF54928
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr5D:+:464288655..464295134

Molecular Weight (calculated)

30105.5 Da

IEP (calculated)

10.394

GRAVY (calculated)

-0.396

Length

277 amino acids

Sequence
(BLAST)

001: MEEGRRGTRT VRVRNISDLA GEREVREFFS FSGEIDHVDI TPDGAAAGRT AYVTFKDAKA LEIALLLSGA TIVDRVVNIT SAEDYIYIPV NEQQLVMNEV
101: TSTAPTADLG QPTEANASPT SVYASKAHDV MTTVIARGSA IRQDAVNKAK SFDEKHQLRA NASARISSFD RRVGLSEKLN TGISVVNEKV KTVDQRLHVS
201: DKTMAALLAA ERKLNDTGSA VKTNRYVSAG TSWLNGAFSK VAKAGHVAGS RTREKFQIAV SNISAKHNGS WRPSRRR

Best Arabidopsis Sequence Match ( AT5G32450.1 )
(BLAST)

001: MQTTRSVQVN NVSDLATERE IHEFFSFSGD IEHIEIQKEF GQSRIAFVTF TDPKALEIAL LLSGATIVDQ IVTITRAENY VQRRETQEVR MLDNAMPLGL
101: QESTTQTKTN MDGNSRAYVS KAQDVVATVL AKGSALGQDA VNKAKAFDEK HQLRANASAK VSSFDKRVGL TEKLSVGISA VNEKVKSVDQ KLQVSDKTMA
201: AIFAAERKLN DTGSAVKSSR YVTAGAAWFS GAFSKVARVG QVAGSKTKEK FNLAVSNMSS KDTPIAV

Arabidopsis Description

Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8L9M9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.