Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G292900.1 | Wheat | endoplasmic reticulum, extracellular | 98.43 | 94.71 |
| TraesCS6A01G265600.1 | Wheat | extracellular | 93.98 | 90.43 |
| Zm00001d054082_P001 | Maize | cytosol | 49.48 | 66.78 |
| Os04t0624800-01 | Rice | nucleus | 64.92 | 65.96 |
| OQU85574 | Sorghum | nucleus | 63.61 | 62.15 |
| Zm00001d051524_P002 | Maize | nucleus | 64.66 | 61.29 |
| Zm00001d046992_P001 | Maize | cytosol | 52.09 | 60.86 |
| Zm00001d046215_P001 | Maize | cytosol | 49.21 | 58.75 |
| CDY01476 | Canola | cytosol | 21.47 | 57.34 |
| VIT_02s0012g01860.t01 | Wine grape | cytosol | 41.62 | 56.38 |
| VIT_16s0039g01860.t01 | Wine grape | cytosol, nucleus, plastid | 40.84 | 56.32 |
| KRH74377 | Soybean | endoplasmic reticulum | 41.1 | 56.27 |
| Zm00001d014267_P001 | Maize | nucleus | 62.04 | 56.16 |
| PGSC0003DMT400008196 | Potato | cytosol, mitochondrion, nucleus | 40.84 | 56.12 |
| Solyc03g097110.2.1 | Tomato | nucleus | 40.58 | 55.76 |
| KRH39571 | Soybean | nucleus | 40.84 | 55.71 |
| TraesCS2D01G444000.1 | Wheat | extracellular | 45.55 | 55.24 |
| PGSC0003DMT400038377 | Potato | cytosol | 40.31 | 54.8 |
| Solyc08g076530.2.1 | Tomato | plastid | 40.31 | 54.8 |
| TraesCS7D01G027100.1 | Wheat | plastid | 37.17 | 53.38 |
| GSMUA_Achr5P14070_001 | Banana | cytosol, nucleus, plastid | 38.48 | 52.88 |
| GSMUA_Achr8P14700_001 | Banana | plastid | 41.62 | 52.13 |
| CDY01477 | Canola | cytosol | 41.1 | 51.82 |
| CDX78795 | Canola | nucleus | 40.31 | 50.83 |
| Bra040177.1-P | Field mustard | nucleus | 40.05 | 50.66 |
| Bra012646.1-P | Field mustard | nucleus | 41.36 | 50.64 |
| AT5G46870.1 | Thale cress | nucleus | 39.01 | 50.51 |
| CDY60787 | Canola | nucleus | 40.05 | 50.49 |
| CDX90453 | Canola | cytosol | 40.84 | 50.49 |
| AT4G17720.1 | Thale cress | cytosol, nucleus, plastid | 40.31 | 49.2 |
| TraesCS4D01G049200.1 | Wheat | cytosol, nucleus, plastid | 36.13 | 48.59 |
| Bra023585.1-P | Field mustard | nucleus | 31.94 | 48.22 |
| AT5G16840.2 | Thale cress | nucleus | 32.46 | 47.69 |
| CDX69415 | Canola | cytosol | 32.2 | 47.31 |
| KRH24024 | Soybean | nucleus | 36.13 | 47.26 |
| CDX78713 | Canola | cytosol | 32.2 | 47.13 |
| Bra006373.1-P | Field mustard | cytosol | 32.2 | 47.13 |
| CDY01473 | Canola | nucleus | 24.35 | 46.97 |
| Bra008589.1-P | Field mustard | cytosol | 32.2 | 46.95 |
| CDX70721 | Canola | cytosol | 31.68 | 46.36 |
| CDY33486 | Canola | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 39.53 | 45.35 |
| Bra024988.1-P | Field mustard | vacuole | 39.53 | 45.35 |
| CDX77703 | Canola | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 39.53 | 45.07 |
| Bra012647.1-P | Field mustard | cytosol | 24.35 | 44.71 |
| CDX90455 | Canola | cytosol | 24.35 | 44.71 |
| PGSC0003DMT400069547 | Potato | nucleus | 38.22 | 42.94 |
| Solyc06g072770.2.1 | Tomato | nucleus | 37.7 | 39.56 |
| CDY16974 | Canola | plastid | 32.2 | 38.68 |
| CDX85485 | Canola | plastid | 31.68 | 38.41 |
| TraesCS5D01G397700.2 | Wheat | cytosol | 26.96 | 37.18 |
| TraesCS2D01G523400.1 | Wheat | nucleus | 20.94 | 32.79 |
| CDY38083 | Canola | nucleus | 31.41 | 28.64 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G249000.1 | EnsemblPlantsGene:TraesCS6D01G249000 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | ncoils:Coil |
| PANTHER:PTHR44136 | PANTHER:PTHR44136:SF4 | PFAM:PF00076 | PFscan:PS50102 | SMART:SM00360 | SUPFAM:SSF54928 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6D:+:352359022..352360429
Molecular Weight (calculated)
41280.1 Da
IEP (calculated)
4.551
GRAVY (calculated)
-0.572
Length
382 amino acids
Sequence
(BLAST)
(BLAST)
001: MFSTVKVHNV SLQASERVIK EFFSFSGDIV HVEMQSGDKR SQFAYITFRD EQEAERAMLL TGATIVDMAI IITPATNYQL PAAVLADLES KSPSSIEAAL
101: RKAEDVAGSM LAKGFILGKD AVEKAKTFDE THQLTSTASA KVSSIDKSLG LSEKISTGTI VVNEKMKEMD EKYQVAEKTK SALVAAEQTV STAGSKIMRH
201: RYILTGAAWV TGAYSKVATT ATEAYNKERA MAEQEDELAK SSEEAGQESK CQESDPAKVP VPENTETGQM ADQEGGCPET NKPEDTEMGN GEQKDRDAEI
301: AKAQTQENTG ITAEEHKHRE AELPKASTPE SFLMTEQTEQ EHKQPVTEVA NSDIPSSPVT IAVCMATDDA NSSNSPKKPG PA
101: RKAEDVAGSM LAKGFILGKD AVEKAKTFDE THQLTSTASA KVSSIDKSLG LSEKISTGTI VVNEKMKEMD EKYQVAEKTK SALVAAEQTV STAGSKIMRH
201: RYILTGAAWV TGAYSKVATT ATEAYNKERA MAEQEDELAK SSEEAGQESK CQESDPAKVP VPENTETGQM ADQEGGCPET NKPEDTEMGN GEQKDRDAEI
301: AKAQTQENTG ITAEEHKHRE AELPKASTPE SFLMTEQTEQ EHKQPVTEVA NSDIPSSPVT IAVCMATDDA NSSNSPKKPG PA
001: MTMTTVKVSN VSLGATDRDL KEFFSFSGDI LYLETQSETE RTKLAYVTFK DLQGAETAVL LSGATIVDSS VIVSMAPDYQ LSPEALASLE PKDSNKSPKA
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP
Arabidopsis Description
Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8LA96]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.