Factsheet for GSMUA_Achr8P14700_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P04780_001
GSMUA_Achr1P11940_001
GSMUA_Achr3P15540_001
GSMUA_Achr4P02760_001
GSMUA_Achr5P09130_001
GSMUA_Achr5P28860_001
GSMUA_Achr6P17450_001
GSMUA_Achr6P34270_001
GSMUA_Achr7P10970_001
GSMUA_Achr7P14790_001
GSMUA_Achr8P02620_001
GSMUA_Achr8P27180_001
GSMUA_Achr9P03220_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17720.1	GSMUA_Achr10P...	AT3G11730.1	21798944
AT4G17720.1	GSMUA_Achr6P17450_001	AT3G11730.1	21798944
AT4G17720.1	GSMUA_Achr10P...	AT3G46060.1	21798944
AT4G17720.1	GSMUA_Achr10P...	AT3G46060.1	21798944
AT4G17720.1	GSMUA_Achr11P...	AT3G46060.1	21798944
AT4G17720.1	GSMUA_Achr6P34270_001	AT3G46060.1	21798944
AT4G17720.1	GSMUA_Achr8P02620_001	AT3G46060.1	21798944
AT4G17720.1	GSMUA_Achr9P03220_001	AT3G46060.1	21798944
AT4G17720.1	GSMUA_AchrUn_...	AT3G46060.1	21798944
AT4G17720.1	GSMUA_AchrUn_...	AT4G25680.1	21798944
AT4G17720.1	GSMUA_Achr5P28860_001	AT5G58750.1	21798944
AT4G17720.1	GSMUA_Achr1P04780_001	AT5G60860.1	21798944
AT4G17720.1	GSMUA_Achr1P11940_001	AT5G60860.1	21798944
AT4G17720.1	GSMUA_Achr3P15540_001	AT5G60860.1	21798944
AT4G17720.1	GSMUA_Achr4P02760_001	AT5G60860.1	21798944
AT4G17720.1	GSMUA_Achr5P09130_001	AT5G60860.1	21798944
AT4G17720.1	GSMUA_Achr7P10970_001	AT5G60860.1	21798944
AT4G17720.1	GSMUA_Achr7P14790_001	AT5G60860.1	21798944
AT4G17720.1	GSMUA_Achr8P27180_001	AT5G60860.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P23330_001	Banana	nucleus, peroxisome, plastid	57.7	72.13
GSMUA_AchrUn_...	Banana	cytosol, extracellular, nucleus	59.02	64.75
VIT_16s0039g01860.t01	Wine grape	cytosol, nucleus, plastid	57.38	63.18
PGSC0003DMT400008196	Potato	cytosol, mitochondrion, nucleus	56.39	61.87
Solyc03g097110.2.1	Tomato	nucleus	56.39	61.87
VIT_02s0012g01860.t01	Wine grape	cytosol	57.05	61.7
KRH74377	Soybean	endoplasmic reticulum	56.39	61.65
KRH39571	Soybean	nucleus	56.39	61.43
GSMUA_Achr5P14070_001	Banana	cytosol, nucleus, plastid	53.77	58.99
Os04t0594400-01	Rice	plasma membrane	60.66	58.92
CDY01476	Canola	cytosol	27.54	58.74
PGSC0003DMT400038377	Potato	cytosol	54.1	58.72
Solyc08g076530.2.1	Tomato	plastid	53.44	58.01
EES12769	Sorghum	cytosol	58.36	56.69
Zm00001d026206_P001	Maize	cytosol, nucleus, plastid	58.03	56.37
TraesCS2D01G444000.1	Wheat	extracellular	58.03	56.19
TraesCS2B01G466100.1	Wheat	extracellular	58.03	55.84
TraesCS2A01G445100.1	Wheat	extracellular	57.7	55.52
Zm00001d002475_P001	Maize	extracellular	57.05	55.41
CDY01477	Canola	cytosol	54.1	54.46
Bra012646.1-P	Field mustard	nucleus	55.08	53.85
CDX90453	Canola	cytosol	54.43	53.72
AT5G46870.1	Thale cress	nucleus	51.8	53.56
CDX78795	Canola	nucleus	53.11	53.47
CDY60787	Canola	nucleus	52.79	53.14
Bra040177.1-P	Field mustard	nucleus	52.46	52.98
AT4G17720.1	Thale cress	cytosol, nucleus, plastid	53.77	52.4
AT5G16840.2	Thale cress	nucleus	44.26	51.92
Bra023585.1-P	Field mustard	nucleus	42.62	51.38
CDX70721	Canola	cytosol	43.61	50.96
Bra006373.1-P	Field mustard	cytosol	42.95	50.19
CDX78713	Canola	cytosol	42.95	50.19
CDX69415	Canola	cytosol	42.62	50.0
KRH24024	Soybean	nucleus	47.54	49.66
Bra008589.1-P	Field mustard	cytosol	42.62	49.62
Zm00001d031612_P001	Maize	cytosol	39.02	49.58
Zm00001d026150_P001	Maize	cytosol	39.02	49.58
CDY01473	Canola	nucleus	31.8	48.99
Zm00001d054082_P001	Maize	cytosol	44.92	48.41
CDY33486	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	52.13	47.75
Bra012647.1-P	Field mustard	cytosol	32.13	47.12
CDX90455	Canola	cytosol	32.13	47.12
CDX77703	Canola	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	51.48	46.87
Bra024988.1-P	Field mustard	vacuole	51.15	46.85
GSMUA_Achr4P10680_001	Banana	cytosol	39.67	45.66
GSMUA_Achr4P00600_001	Banana	cytosol, nucleus, plastid	45.9	44.73
GSMUA_Achr8P04640_001	Banana	cytosol	38.69	44.36
Os04t0624800-01	Rice	nucleus	54.43	44.15
PGSC0003DMT400069547	Potato	nucleus	48.85	43.82
Zm00001d046992_P001	Maize	cytosol	46.23	43.12
TraesCS6D01G249000.1	Wheat	nucleus, plastid	52.13	41.62
CDX85485	Canola	plastid	42.95	41.59
CDY16974	Canola	plastid	42.95	41.2
Solyc06g072770.2.1	Tomato	nucleus	48.85	40.93
Zm00001d031493_P001	Maize	cytosol, mitochondrion, plastid	43.28	40.62
OQU85574	Sorghum	nucleus	51.8	40.41
TraesCS6B01G292900.1	Wheat	endoplasmic reticulum, extracellular	51.8	39.8
TraesCS6A01G265600.1	Wheat	extracellular	51.48	39.55
Zm00001d051524_P002	Maize	nucleus	50.82	38.46
GSMUA_Achr4P03340_001	Banana	nucleus	22.95	38.25
Zm00001d014267_P001	Maize	nucleus	50.49	36.49
GSMUA_Achr3P19960_001	Banana	cytosol	28.2	35.54
Zm00001d046215_P001	Maize	cytosol	35.41	33.75
CDY38083	Canola	nucleus	43.28	31.5
GSMUA_AchrUn_...	Banana	cytosol	15.74	29.81

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	EnsemblPlantsGene:GSMUA_Achr8G14700_001	EnsemblPlants:GSMUA_Achr8P14700_001	EnsemblPlants:GSMUA_Achr8T14700_001	InterPro:IPR000504	InterPro:IPR012677
UniProt:M0TQH3	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44136	PANTHER:PTHR44136:SF5
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000294EA08	SEG:seg

Description

RNA recognition motif, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G14700_001]

Coordinates

chr8:-:12066792..12068516

Molecular Weight (calculated)

32373.0 Da

IEP (calculated)

4.976

GRAVY (calculated)

-0.335

Length

305 amino acids

Sequence
(BLAST)

001: MSFVDFAMFV STVKISNVSR GASVQDIKEF FSFSGDIVYI EVQSVDESSQ VAYVTFKDSQ GAETALLLTG AKICDLVIDI TPAVDYQLPA TVLIPPASND
101: GDEGAGGIGS AVRKAENVVT TMLAKGFVLG KDALNKAKSF DEKHQLTSTA SAKVSDLDKR MGLSEKISMG TAAVNEKVME MDQKYQVSEK TRSAIAAAEQ
201: KVSTAGAAIM KNRYVFTGAA WVTGAFGKVA RAASDVGTKA MDKAATEQER RKVEEQLAKG HDESGDPKDS TTSSKDSTTS DDSPTSKDSP TKHQDKPEPA
301: QGTIL

Best Arabidopsis Sequence Match ( AT4G17720.1 )
(BLAST)

001: MTMTTVKVSN VSLGATDRDL KEFFSFSGDI LYLETQSETE RTKLAYVTFK DLQGAETAVL LSGATIVDSS VIVSMAPDYQ LSPEALASLE PKDSNKSPKA
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP

Arabidopsis Description

Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8LA96]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.