Factsheet for GSMUA_Achr4P00600_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0011g06050.t01	Wine grape	cytosol	57.51	63.38
KRH70369	Soybean	cytosol	58.79	59.35
KRH49688	Soybean	nucleus	57.83	58.39
GSMUA_Achr9P23330_001	Banana	nucleus, peroxisome, plastid	44.09	56.56
GSMUA_AchrUn_...	Banana	cytosol, extracellular, nucleus	47.92	53.96
AT1G67950.2	Thale cress	cytosol	46.96	52.69
CDY01872	Canola	cytosol, plastid	46.01	50.7
Os11t0549537-00	Rice	mitochondrion, plastid	37.38	48.35
EES09901	Sorghum	plastid	47.28	48.05
Zm00001d053093_P001	Maize	cytosol, plastid	46.65	46.06
GSMUA_Achr8P14700_001	Banana	plastid	44.73	45.9
GSMUA_Achr5P14070_001	Banana	cytosol, nucleus, plastid	40.58	45.68
GSMUA_Achr4P10680_001	Banana	cytosol	34.5	40.75
GSMUA_Achr4P03340_001	Banana	nucleus	22.36	38.25
GSMUA_Achr3P19960_001	Banana	cytosol	29.07	37.6
GSMUA_Achr8P04640_001	Banana	cytosol	30.03	35.34
GSMUA_AchrUn_...	Banana	cytosol	15.02	29.19

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	EnsemblPlantsGene:GSMUA_Achr4G00600_001	EnsemblPlants:GSMUA_Achr4P00600_001	EnsemblPlants:GSMUA_Achr4T00600_001	InterPro:IPR000504	InterPro:IPR012677
UniProt:M0SJX7	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44136	PANTHER:PTHR44136:SF2
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000296910C	SEG:seg

Description

RNA recognition motif containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G00600_001]

Coordinates

chr4:-:496905..498734

Molecular Weight (calculated)

34128.4 Da

IEP (calculated)

5.123

GRAVY (calculated)

-0.223

Length

313 amino acids

Sequence
(BLAST)

001: MVHHLQVPME QCNLRAGADP QPMNASNWTI DVSDVTTVKI NNVSSAASVK DIEEFFSFSG HIKYIEMQRE SEMSQLAYVT FKDSQGADTA LLLSGSTIVD
101: RCVTISRVEN YQLPPEACRR TLEDESSPTN AAVGKTEDVV STMLAKGFVL GKDALKRARS FDERHHFLSA ASATIASLDR KMGLSEKFST GTAMVSGKVR
201: EVDEQFQVSG ITRSALAATE QMASNAGSAI MSNHYVSTGA SWVSSALSKV AKAAEDVSTM TKEKVEKAEE QRKEIICRDR REMVSEFAQV YLDEPSVGEP
301: AIVPVVSVDV KII

Best Arabidopsis Sequence Match ( AT4G17720.1 )
(BLAST)

001: MTMTTVKVSN VSLGATDRDL KEFFSFSGDI LYLETQSETE RTKLAYVTFK DLQGAETAVL LSGATIVDSS VIVSMAPDYQ LSPEALASLE PKDSNKSPKA
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP

Arabidopsis Description

Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8LA96]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.