Factsheet for GSMUA_Achr9P23330_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, nucleus

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P04780_001
GSMUA_Achr1P11940_001
GSMUA_Achr3P15540_001
GSMUA_Achr4P02760_001
GSMUA_Achr5P09130_001
GSMUA_Achr5P28860_001
GSMUA_Achr6P17450_001
GSMUA_Achr6P34270_001
GSMUA_Achr7P10970_001
GSMUA_Achr7P14790_001
GSMUA_Achr8P02620_001
GSMUA_Achr8P27180_001
GSMUA_Achr9P03220_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17720.1	GSMUA_Achr10P...	AT3G11730.1	21798944
AT4G17720.1	GSMUA_Achr6P17450_001	AT3G11730.1	21798944
AT4G17720.1	GSMUA_Achr10P...	AT3G46060.1	21798944
AT4G17720.1	GSMUA_Achr10P...	AT3G46060.1	21798944
AT4G17720.1	GSMUA_Achr11P...	AT3G46060.1	21798944
AT4G17720.1	GSMUA_Achr6P34270_001	AT3G46060.1	21798944
AT4G17720.1	GSMUA_Achr8P02620_001	AT3G46060.1	21798944
AT4G17720.1	GSMUA_Achr9P03220_001	AT3G46060.1	21798944
AT4G17720.1	GSMUA_AchrUn_...	AT3G46060.1	21798944
AT4G17720.1	GSMUA_AchrUn_...	AT4G25680.1	21798944
AT4G17720.1	GSMUA_Achr5P28860_001	AT5G58750.1	21798944
AT4G17720.1	GSMUA_Achr1P04780_001	AT5G60860.1	21798944
AT4G17720.1	GSMUA_Achr1P11940_001	AT5G60860.1	21798944
AT4G17720.1	GSMUA_Achr3P15540_001	AT5G60860.1	21798944
AT4G17720.1	GSMUA_Achr4P02760_001	AT5G60860.1	21798944
AT4G17720.1	GSMUA_Achr5P09130_001	AT5G60860.1	21798944
AT4G17720.1	GSMUA_Achr7P10970_001	AT5G60860.1	21798944
AT4G17720.1	GSMUA_Achr7P14790_001	AT5G60860.1	21798944
AT4G17720.1	GSMUA_Achr8P27180_001	AT5G60860.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol, extracellular, nucleus	83.61	73.38
Os06t0112400-01	Rice	plasma membrane	77.05	72.03
EER89059	Sorghum	cytosol	77.87	70.63
HORVU7Hr1G003710.1	Barley	cytosol	73.36	68.06
TraesCS4A01G458600.1	Wheat	cytosol, nucleus, plastid	73.77	67.67
TraesCS7D01G027100.1	Wheat	plastid	73.36	67.29
Zm00001d045559_P002	Maize	cytosol, endoplasmic reticulum, nucleus	76.64	67.27
VIT_02s0012g01860.t01	Wine grape	cytosol	75.82	65.6
PGSC0003DMT400038377	Potato	cytosol	74.59	64.77
VIT_16s0039g01860.t01	Wine grape	cytosol, nucleus, plastid	73.36	64.62
PGSC0003DMT400008196	Potato	cytosol, mitochondrion, nucleus	73.36	64.39
Solyc03g097110.2.1	Tomato	nucleus	73.36	64.39
Solyc08g076530.2.1	Tomato	plastid	73.77	64.06
CDY01476	Canola	cytosol	37.3	63.64
KRH74377	Soybean	endoplasmic reticulum	71.31	62.37
KRH39571	Soybean	nucleus	70.9	61.79
Bra023585.1-P	Field mustard	nucleus	60.66	58.5
AT5G16840.2	Thale cress	nucleus	62.3	58.46
Bra006373.1-P	Field mustard	cytosol	61.89	57.85
CDX70721	Canola	cytosol	61.89	57.85
CDX78713	Canola	cytosol	61.89	57.85
GSMUA_Achr8P14700_001	Banana	plastid	72.13	57.7
GSMUA_Achr5P14070_001	Banana	cytosol, nucleus, plastid	65.16	57.19
TraesCS7A01G030900.2	Wheat	plastid	73.36	56.83
CDY01477	Canola	cytosol	68.85	55.45
AT5G46870.1	Thale cress	nucleus	66.8	55.25
CDX78795	Canola	nucleus	68.44	55.12
CDX69415	Canola	cytosol	58.61	55.0
Bra012646.1-P	Field mustard	nucleus	70.08	54.81
CDY60787	Canola	nucleus	68.03	54.79
Bra040177.1-P	Field mustard	nucleus	67.62	54.64
AT4G17720.1	Thale cress	cytosol, nucleus, plastid	70.08	54.63
Bra008589.1-P	Field mustard	cytosol	58.61	54.58
CDX90453	Canola	cytosol	68.85	54.37
Zm00001d035920_P002	Maize	extracellular, vacuole	77.05	54.34
KRH24024	Soybean	nucleus	59.84	50.0
CDX90455	Canola	cytosol	42.21	49.52
Bra012647.1-P	Field mustard	cytosol	42.21	49.52
CDY01473	Canola	nucleus	40.16	49.49
CDY33486	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	66.39	48.65
Bra024988.1-P	Field mustard	vacuole	65.98	48.35
CDX77703	Canola	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	65.98	48.06
GSMUA_Achr4P10680_001	Banana	cytosol	52.05	47.92
CDX85485	Canola	plastid	61.07	47.3
PGSC0003DMT400069547	Potato	nucleus	65.57	47.06
GSMUA_Achr8P04640_001	Banana	cytosol	49.59	45.49
CDY16974	Canola	plastid	59.02	45.28
Solyc06g072770.2.1	Tomato	nucleus	65.98	44.23
GSMUA_Achr4P00600_001	Banana	cytosol, nucleus, plastid	56.56	44.09
GSMUA_Achr4P03340_001	Banana	nucleus	29.51	39.34
CDY38083	Canola	nucleus	61.07	35.56
GSMUA_Achr3P19960_001	Banana	cytosol	35.25	35.54
GSMUA_AchrUn_...	Banana	cytosol	20.9	31.68

Protein Annotations

EnsemblPlants:GSMUA_Achr9P23330_001	EnsemblPlants:GSMUA_Achr9T23330_001	EnsemblPlantsGene:GSMUA_Achr9G23330_001	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR44136	PANTHER:PTHR44136:SF5	PFAM:PF00076	PFscan:PS50102	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI0002955440	UniProt:M0U2U2	MapMan:35.1	:	:

Description

RNA recognition motif containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr9G23330_001]

Coordinates

chr9:+:28193118..28197173

Molecular Weight (calculated)

26028.9 Da

IEP (calculated)

8.768

GRAVY (calculated)

-0.146

Length

244 amino acids

Sequence
(BLAST)

001: MSVRTVKVSN VSLSASLHDI KEFFSFSGDI EYVEMQSADE WSQIAYVTFK DSQGAETALL LSGATIVDLS VIVTPAPEYQ LPVTVSAPTV NKEVKVTGGG
101: ESASHKAEDV VTSMLAKGFI LGKDAIGKAK AFDEKHQLTS TASAKVSSFD KKIGLTEKIS MGTSAVNEKV KEMDQKFQVS EKTKSAFAAA EQKVSVAGSA
201: IMKNRYVFTG ASWVTGAFNK VAKAASDVGS KTKEKVAAEQ EHRI

Best Arabidopsis Sequence Match ( AT4G17720.1 )
(BLAST)

001: MTMTTVKVSN VSLGATDRDL KEFFSFSGDI LYLETQSETE RTKLAYVTFK DLQGAETAVL LSGATIVDSS VIVSMAPDYQ LSPEALASLE PKDSNKSPKA
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP

Arabidopsis Description

Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8LA96]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.