Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY33486 | Canola | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 86.44 | 76.58 |
| Bra024988.1-P | Field mustard | vacuole | 86.1 | 76.28 |
| CDX77703 | Canola | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 85.42 | 75.22 |
| AT4G17720.1 | Thale cress | cytosol, nucleus, plastid | 75.25 | 70.93 |
| VIT_02s0012g01860.t01 | Wine grape | cytosol | 64.07 | 67.02 |
| GSMUA_Achr9P23330_001 | Banana | nucleus, peroxisome, plastid | 55.25 | 66.8 |
| KRH39571 | Soybean | nucleus | 63.05 | 66.43 |
| KRH74377 | Soybean | endoplasmic reticulum | 62.71 | 66.31 |
| Solyc08g076530.2.1 | Tomato | plastid | 60.34 | 63.35 |
| GSMUA_AchrUn_... | Banana | cytosol, extracellular, nucleus | 59.32 | 62.95 |
| PGSC0003DMT400038377 | Potato | cytosol | 59.66 | 62.63 |
| Os06t0112400-01 | Rice | plasma membrane | 50.17 | 56.7 |
| HORVU7Hr1G003710.1 | Barley | cytosol | 50.51 | 56.65 |
| EER89059 | Sorghum | cytosol | 51.19 | 56.13 |
| TraesCS4A01G458600.1 | Wheat | cytosol, nucleus, plastid | 50.51 | 56.02 |
| TraesCS7D01G027100.1 | Wheat | plastid | 50.51 | 56.02 |
| Zm00001d045559_P002 | Maize | cytosol, endoplasmic reticulum, nucleus | 51.86 | 55.04 |
| AT5G16840.2 | Thale cress | nucleus | 47.12 | 53.46 |
| Zm00001d026206_P001 | Maize | cytosol, nucleus, plastid | 55.25 | 51.91 |
| GSMUA_Achr8P14700_001 | Banana | plastid | 53.56 | 51.8 |
| EES12769 | Sorghum | cytosol | 54.92 | 51.59 |
| Zm00001d002475_P001 | Maize | extracellular | 54.58 | 51.27 |
| TraesCS2D01G444000.1 | Wheat | extracellular | 54.24 | 50.79 |
| Os04t0594400-01 | Rice | plasma membrane | 53.9 | 50.64 |
| TraesCS2B01G466100.1 | Wheat | extracellular | 54.24 | 50.47 |
| TraesCS2A01G445100.1 | Wheat | extracellular | 53.56 | 49.84 |
| GSMUA_Achr5P14070_001 | Banana | cytosol, nucleus, plastid | 46.44 | 49.28 |
| TraesCS7A01G030900.2 | Wheat | plastid | 50.51 | 47.3 |
| Zm00001d026150_P001 | Maize | cytosol | 37.97 | 46.67 |
| Zm00001d031612_P001 | Maize | cytosol | 37.97 | 46.67 |
| Zm00001d035920_P002 | Maize | extracellular, vacuole | 52.54 | 44.8 |
| AT1G67950.2 | Thale cress | cytosol | 41.36 | 43.73 |
| Zm00001d054082_P001 | Maize | cytosol | 41.69 | 43.46 |
| AT5G32450.1 | Thale cress | cytosol | 38.98 | 43.07 |
| Os04t0624800-01 | Rice | nucleus | 50.51 | 39.63 |
| TraesCS6D01G249000.1 | Wheat | nucleus, plastid | 50.51 | 39.01 |
| Zm00001d046992_P001 | Maize | cytosol | 43.05 | 38.84 |
| Zm00001d031493_P001 | Maize | cytosol, mitochondrion, plastid | 42.03 | 38.15 |
| TraesCS6A01G265600.1 | Wheat | extracellular | 50.85 | 37.78 |
| TraesCS6B01G292900.1 | Wheat | endoplasmic reticulum, extracellular | 50.17 | 37.28 |
| OQU85574 | Sorghum | nucleus | 48.14 | 36.32 |
| AT1G14340.1 | Thale cress | nucleus | 29.15 | 35.25 |
| Zm00001d051524_P002 | Maize | nucleus | 46.44 | 33.99 |
| Zm00001d014267_P001 | Maize | nucleus | 45.76 | 31.99 |
| AT3G01210.1 | Thale cress | cytosol | 25.42 | 30.12 |
| Zm00001d046215_P001 | Maize | cytosol | 31.86 | 29.38 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:834731 | ProteinID:AED95438.1 | ProteinID:ANM69228.1 | ArrayExpress:AT5G46870 |
| EnsemblPlantsGene:AT5G46870 | RefSeq:AT5G46870 | TAIR:AT5G46870 | RefSeq:AT5G46870-TAIR-G | EnsemblPlants:AT5G46870.1 | TAIR:AT5G46870.1 |
| EMBL:BT010766 | EMBL:BT011793 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | RefSeq:NP_001330925.1 | RefSeq:NP_199498.2 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PO:PO:0000005 | PO:PO:0000293 | PFscan:PS50102 | PANTHER:PTHR44136 | PANTHER:PTHR44136:SF5 | UniProt:Q6NM69 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000019706A | InterPro:Vip1-like_RRM_plant |
| SEG:seg | : | : | : | : | : |
Description
At5g46870 [Source:UniProtKB/TrEMBL;Acc:Q6NM69]
Coordinates
chr5:+:19015233..19017247
Molecular Weight (calculated)
31898.5 Da
IEP (calculated)
4.948
GRAVY (calculated)
-0.399
Length
295 amino acids
Sequence
(BLAST)
(BLAST)
001: MSMVTVKVSN VSLEATERDL KEFFSFSGDI AYLETQSEND GSKLAYVTFK DLQGAETAVL LTGSTIVDSS VTVTMSPDYQ LPPDALASIE SLKESNKSSS
101: PTREDVSVFR KAEDVVSGMI SKGFVLGKDA IAKAKSLDEK HQLTSTASAR VTSFDKRIGF TEKINTGTTV VSEKVKEVDQ KFQVTEKTKS AIAAAEQTVS
201: NAGSAIMKNR YVLTGATWVT GAFNRVSKAA EEVGQKAKEK VGLAEEEEEE KKKVVDEVAI VHLTESPKAL DQSEQDSKLP ESKSQPHKEL NASVV
101: PTREDVSVFR KAEDVVSGMI SKGFVLGKDA IAKAKSLDEK HQLTSTASAR VTSFDKRIGF TEKINTGTTV VSEKVKEVDQ KFQVTEKTKS AIAAAEQTVS
201: NAGSAIMKNR YVLTGATWVT GAFNRVSKAA EEVGQKAKEK VGLAEEEEEE KKKVVDEVAI VHLTESPKAL DQSEQDSKLP ESKSQPHKEL NASVV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.