Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G444000.1 | Wheat | extracellular | 83.44 | 83.17 |
| EES12769 | Sorghum | cytosol | 82.8 | 82.8 |
| TraesCS2A01G445100.1 | Wheat | extracellular | 83.44 | 82.65 |
| Zm00001d026206_P001 | Maize | cytosol, nucleus, plastid | 81.85 | 81.85 |
| TraesCS2B01G466100.1 | Wheat | extracellular | 82.48 | 81.7 |
| Zm00001d002475_P001 | Maize | extracellular | 80.57 | 80.57 |
| Zm00001d026150_P001 | Maize | cytosol | 56.37 | 73.75 |
| Zm00001d031612_P001 | Maize | cytosol | 56.37 | 73.75 |
| VIT_16s0039g01860.t01 | Wine grape | cytosol, nucleus, plastid | 56.69 | 64.26 |
| VIT_02s0012g01860.t01 | Wine grape | cytosol | 57.01 | 63.48 |
| PGSC0003DMT400008196 | Potato | cytosol, mitochondrion, nucleus | 55.41 | 62.59 |
| Solyc03g097110.2.1 | Tomato | nucleus | 55.1 | 62.23 |
| PGSC0003DMT400038377 | Potato | cytosol | 55.41 | 61.92 |
| Solyc08g076530.2.1 | Tomato | plastid | 55.1 | 61.57 |
| Os06t0112400-01 | Rice | plasma membrane | 50.64 | 60.92 |
| GSMUA_Achr8P14700_001 | Banana | plastid | 58.92 | 60.66 |
| KRH74377 | Soybean | endoplasmic reticulum | 53.82 | 60.57 |
| KRH39571 | Soybean | nucleus | 53.5 | 60.0 |
| Zm00001d031493_P001 | Maize | cytosol, mitochondrion, plastid | 61.47 | 59.38 |
| GSMUA_Achr5P14070_001 | Banana | cytosol, nucleus, plastid | 51.91 | 58.63 |
| CDY01476 | Canola | cytosol | 26.11 | 57.34 |
| CDY01477 | Canola | cytosol | 54.14 | 56.11 |
| CDX90453 | Canola | cytosol | 54.46 | 55.34 |
| Bra012646.1-P | Field mustard | nucleus | 54.78 | 55.13 |
| CDX78795 | Canola | nucleus | 53.18 | 55.12 |
| CDY60787 | Canola | nucleus | 52.55 | 54.46 |
| Bra040177.1-P | Field mustard | nucleus | 52.23 | 54.3 |
| AT4G17720.1 | Thale cress | cytosol, nucleus, plastid | 53.82 | 53.99 |
| AT5G46870.1 | Thale cress | nucleus | 50.64 | 53.9 |
| CDX78713 | Canola | cytosol | 44.27 | 53.26 |
| Bra006373.1-P | Field mustard | cytosol | 44.27 | 53.26 |
| CDX70721 | Canola | cytosol | 43.95 | 52.87 |
| AT5G16840.2 | Thale cress | nucleus | 43.63 | 52.69 |
| Bra023585.1-P | Field mustard | nucleus | 41.4 | 51.38 |
| KRH24024 | Soybean | nucleus | 47.77 | 51.37 |
| CDX69415 | Canola | cytosol | 42.04 | 50.77 |
| CDY01473 | Canola | nucleus | 31.85 | 50.51 |
| Bra008589.1-P | Field mustard | cytosol | 41.72 | 50.0 |
| Os03t0713600-01 | Rice | cytosol | 45.22 | 50.0 |
| Os04t0624800-01 | Rice | nucleus | 58.6 | 48.94 |
| CDY33486 | Canola | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 51.59 | 48.65 |
| Bra024988.1-P | Field mustard | vacuole | 51.59 | 48.65 |
| CDX90455 | Canola | cytosol | 32.17 | 48.56 |
| Bra012647.1-P | Field mustard | cytosol | 32.17 | 48.56 |
| CDX77703 | Canola | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 51.59 | 48.36 |
| PGSC0003DMT400069547 | Potato | nucleus | 47.45 | 43.82 |
| CDY16974 | Canola | plastid | 42.36 | 41.82 |
| CDX85485 | Canola | plastid | 41.72 | 41.59 |
| Solyc06g072770.2.1 | Tomato | nucleus | 47.13 | 40.66 |
| Os03t0748900-01 | Rice | cytosol | 35.03 | 39.57 |
| Os11t0549537-00 | Rice | mitochondrion, plastid | 26.75 | 34.71 |
| CDY38083 | Canola | nucleus | 41.72 | 31.26 |
| Os04t0641400-02 | Rice | plastid | 27.07 | 29.62 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:4336842 | EMBL:AK067019 | ProteinID:BAF15641.1 | ProteinID:BAS90779.1 |
| ProteinID:CAE04149.1 | ProteinID:EAZ31837.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | EnsemblPlantsGene:Os04g0594400 | EnsemblPlants:Os04t0594400-01 | PFscan:PS50102 |
| PANTHER:PTHR44136 | PANTHER:PTHR44136:SF4 | UniProt:Q0JAJ6 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI00001B1F2C | RefSeq:XP_015633673.1 | SEG:seg | : | : |
Description
Aldo/keto reductase domain containing protein. (Os04t0594400-01)
Coordinates
chr4:-:30046907..30050579
Molecular Weight (calculated)
33234.0 Da
IEP (calculated)
4.740
GRAVY (calculated)
-0.284
Length
314 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASTFSTVK VSNVSLKASL RDVKEFFSFS GDIVHVEMQS SDELSQVAYI TFKDNQGSET AMLLTGATIV DMAVIVTPAT DYELPASVLA ALEPKDSKPS
101: ALQKAEDIVG TMLAKGFILG RDALDRAKAL DEKHQLTSTA TARVSSFDKK MGLSEKISVG TSAVNDKVKE MDQKYQVSEK TRSALAAAEQ SVSTAGSAIM
201: KNRYVLTGAA WVTGAFNKVA NAANDVGTKA KEKIASEQEH KTVELESAEP NSSEGHGTQK DVDGEFAKIQ VSESPEDIPI STTATVPITD EDSSQASPPA
301: ASPKKPEPAQ GLIL
101: ALQKAEDIVG TMLAKGFILG RDALDRAKAL DEKHQLTSTA TARVSSFDKK MGLSEKISVG TSAVNDKVKE MDQKYQVSEK TRSALAAAEQ SVSTAGSAIM
201: KNRYVLTGAA WVTGAFNKVA NAANDVGTKA KEKIASEQEH KTVELESAEP NSSEGHGTQK DVDGEFAKIQ VSESPEDIPI STTATVPITD EDSSQASPPA
301: ASPKKPEPAQ GLIL
001: MTMTTVKVSN VSLGATDRDL KEFFSFSGDI LYLETQSETE RTKLAYVTFK DLQGAETAVL LSGATIVDSS VIVSMAPDYQ LSPEALASLE PKDSNKSPKA
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP
Arabidopsis Description
Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8LA96]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.