Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 4
- nucleus 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES09901 | Sorghum | plastid | 66.94 | 52.6 |
| Zm00001d053093_P001 | Maize | cytosol, plastid | 67.77 | 51.73 |
| GSMUA_Achr4P00600_001 | Banana | cytosol, nucleus, plastid | 48.35 | 37.38 |
| Os03t0713600-01 | Rice | cytosol | 42.98 | 36.62 |
| VIT_01s0011g06050.t01 | Wine grape | cytosol | 40.08 | 34.15 |
| Os06t0112400-01 | Rice | plasma membrane | 36.78 | 34.1 |
| KRH49688 | Soybean | nucleus | 42.98 | 33.55 |
| KRH70369 | Soybean | cytosol | 42.15 | 32.9 |
| AT1G67950.2 | Thale cress | cytosol | 35.12 | 30.47 |
| CDY01872 | Canola | cytosol, plastid | 34.3 | 29.23 |
| Os04t0594400-01 | Rice | plasma membrane | 34.71 | 26.75 |
| Os04t0641400-02 | Rice | plastid | 29.75 | 25.09 |
| Os03t0748900-01 | Rice | cytosol | 28.51 | 24.82 |
| Os04t0624800-01 | Rice | nucleus | 36.36 | 23.4 |
Protein Annotations
| EnsemblPlants:Os11t0549537-00 | EnsemblPlantsGene:Os11g0549537 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR44136 | PANTHER:PTHR44136:SF2 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:BAT14397.1 | SEG:seg |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0003939896 | UniProt:A0A0P0Y359 | MapMan:35.1 | : |
Description
Similar to RNA recognition motif containing protein. (Os11t0549537-00)
Coordinates
chr11:-:20315329..20316947
Molecular Weight (calculated)
26481.1 Da
IEP (calculated)
6.523
GRAVY (calculated)
-0.349
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLLLQVRLD PGYLRIGVTP PQFSTSSPSP PPSPPHQLIS TSPNWTIDVS DARTIKVTNI SMSATADNIK EFFSFSGEVE YVEMRRESET SQVAYVTFKE
101: FHGADTALLL SGASISEASV NITPVEDYVL PPEAYFYRQD TGSPRTPTEA AVKKAEEVVS TMLAKGFVLS KDALKRARSF DDRHQLLSTA SARVASLDRR
201: FGLSDKFSAG DVAHARVQVD APASPAHAAR EQPDGHYKNK MM
101: FHGADTALLL SGASISEASV NITPVEDYVL PPEAYFYRQD TGSPRTPTEA AVKKAEEVVS TMLAKGFVLS KDALKRARSF DDRHQLLSTA SARVASLDRR
201: FGLSDKFSAG DVAHARVQVD APASPAHAAR EQPDGHYKNK MM
001: MISPQAAFID SDQTQHNILM DSQSTVSGVK TVKISNVSLI VSKKDVKEFF SFSGDIQYVE MRSETQESQV AYVTFKDSQG AETAMLLTGA VIADLRVSIT
101: PAVNYQLPPE ALALDSEHSF NGFSVKKAED VVNIMVGRGY ALGKDAMEKA KAFDDRHNLI SNASATIASL DDKMGLSEKL SIGTTVVNEK LRDIDERYQV
201: REITKSALAA AEETAISART ALMANPYVSS GASWFSNAFG AVTKAVKEKV ENGGEGRKEI ITLDPSSPKV PAVVPVKLG
101: PAVNYQLPPE ALALDSEHSF NGFSVKKAED VVNIMVGRGY ALGKDAMEKA KAFDDRHNLI SNASATIASL DDKMGLSEKL SIGTTVVNEK LRDIDERYQV
201: REITKSALAA AEETAISART ALMANPYVSS GASWFSNAFG AVTKAVKEKV ENGGEGRKEI ITLDPSSPKV PAVVPVKLG
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4HVJ1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.