Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY01872 | Canola | cytosol, plastid | 82.08 | 80.63 |
| VIT_01s0011g06050.t01 | Wine grape | cytosol | 55.2 | 54.23 |
| TraesCS4B01G049100.1 | Wheat | cytosol, nucleus, plastid | 51.97 | 51.06 |
| TraesCS4A01G265800.1 | Wheat | cytosol, nucleus, plastid | 51.97 | 51.06 |
| Zm00001d033766_P002 | Maize | cytosol, nucleus, plastid | 51.61 | 50.88 |
| Zm00001d013419_P001 | Maize | cytosol, nucleus, plastid | 51.61 | 50.88 |
| TraesCS4D01G049200.1 | Wheat | cytosol, nucleus, plastid | 51.25 | 50.35 |
| Os03t0713600-01 | Rice | cytosol | 51.25 | 50.35 |
| OQU91106 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 51.61 | 49.15 |
| KRH49688 | Soybean | nucleus | 54.48 | 49.03 |
| KRH70369 | Soybean | cytosol | 54.48 | 49.03 |
| GSMUA_Achr4P00600_001 | Banana | cytosol, nucleus, plastid | 52.69 | 46.96 |
| HORVU4Hr1G008120.3 | Barley | plastid | 51.97 | 44.48 |
| AT5G16840.2 | Thale cress | nucleus | 40.86 | 43.85 |
| AT5G46870.1 | Thale cress | nucleus | 43.73 | 41.36 |
| AT4G17720.1 | Thale cress | cytosol, nucleus, plastid | 44.44 | 39.62 |
| AT5G32450.1 | Thale cress | cytosol | 35.84 | 37.45 |
| GSMUA_Achr4P03340_001 | Banana | nucleus | 24.37 | 37.16 |
| AT1G14340.1 | Thale cress | nucleus | 31.54 | 36.07 |
| EES09901 | Sorghum | plastid | 39.78 | 36.04 |
| Os11t0549537-00 | Rice | mitochondrion, plastid | 30.47 | 35.12 |
| Zm00001d053093_P001 | Maize | cytosol, plastid | 39.78 | 35.02 |
| AT3G01210.1 | Thale cress | cytosol | 24.73 | 27.71 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:843123 | UniProt:A0A178WL90 | ProteinID:AEE34728.1 | ArrayExpress:AT1G67950 |
| EnsemblPlantsGene:AT1G67950 | RefSeq:AT1G67950 | TAIR:AT1G67950 | RefSeq:AT1G67950-TAIR-G | EnsemblPlants:AT1G67950.2 | TAIR:AT1G67950.2 |
| Unigene:At.27658 | UniProt:F4HVJ1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | RefSeq:NP_849858.1 | InterPro:Nucleotide-bd_a/b_plait_sf | ProteinID:OAP18335.1 | PFAM:PF00076 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50102 | PANTHER:PTHR44136 | PANTHER:PTHR44136:SF2 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0000197142 | SEG:seg | : |
Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4HVJ1]
Coordinates
chr1:-:25478713..25480431
Molecular Weight (calculated)
30018.6 Da
IEP (calculated)
5.046
GRAVY (calculated)
-0.139
Length
279 amino acids
Sequence
(BLAST)
(BLAST)
001: MISPQAAFID SDQTQHNILM DSQSTVSGVK TVKISNVSLI VSKKDVKEFF SFSGDIQYVE MRSETQESQV AYVTFKDSQG AETAMLLTGA VIADLRVSIT
101: PAVNYQLPPE ALALDSEHSF NGFSVKKAED VVNIMVGRGY ALGKDAMEKA KAFDDRHNLI SNASATIASL DDKMGLSEKL SIGTTVVNEK LRDIDERYQV
201: REITKSALAA AEETAISART ALMANPYVSS GASWFSNAFG AVTKAVKEKV ENGGEGRKEI ITLDPSSPKV PAVVPVKLG
101: PAVNYQLPPE ALALDSEHSF NGFSVKKAED VVNIMVGRGY ALGKDAMEKA KAFDDRHNLI SNASATIASL DDKMGLSEKL SIGTTVVNEK LRDIDERYQV
201: REITKSALAA AEETAISART ALMANPYVSS GASWFSNAFG AVTKAVKEKV ENGGEGRKEI ITLDPSSPKV PAVVPVKLG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.