Factsheet for GSMUA_Achr4P03340_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 2
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P23330_001	Banana	nucleus, peroxisome, plastid	39.34	29.51
GSMUA_AchrUn_...	Banana	cytosol, extracellular, nucleus	42.08	27.7
TraesCS4D01G049200.1	Wheat	cytosol, nucleus, plastid	42.62	27.46
TraesCS4B01G049100.1	Wheat	cytosol, nucleus, plastid	42.62	27.46
TraesCS4A01G265800.1	Wheat	cytosol, nucleus, plastid	42.62	27.46
Zm00001d033766_P002	Maize	cytosol, nucleus, plastid	41.53	26.86
VIT_01s0011g06050.t01	Wine grape	cytosol	40.98	26.41
Os03t0713600-01	Rice	cytosol	40.98	26.41
Zm00001d013419_P001	Maize	cytosol, nucleus, plastid	40.44	26.15
OQU91106	Sorghum	cytosol, mitochondrion, nucleus, plastid	41.53	25.94
AT1G67950.2	Thale cress	cytosol	37.16	24.37
KRH49688	Soybean	nucleus	40.98	24.19
GSMUA_Achr5P14070_001	Banana	cytosol, nucleus, plastid	36.61	24.1
KRH70369	Soybean	cytosol	40.44	23.87
HORVU4Hr1G008120.3	Barley	plastid	41.53	23.31
GSMUA_Achr8P14700_001	Banana	plastid	38.25	22.95
CDY01872	Canola	cytosol, plastid	35.52	22.89
GSMUA_Achr4P00600_001	Banana	cytosol, nucleus, plastid	38.25	22.36
GSMUA_Achr4P10680_001	Banana	cytosol	30.05	20.75
GSMUA_Achr3P19960_001	Banana	cytosol	27.32	20.66
GSMUA_Achr8P04640_001	Banana	cytosol	27.87	19.17
GSMUA_AchrUn_...	Banana	cytosol	10.38	11.8

Protein Annotations

EnsemblPlants:GSMUA_Achr4P03340_001	EnsemblPlants:GSMUA_Achr4T03340_001	EnsemblPlantsGene:GSMUA_Achr4G03340_001	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR44136	PANTHER:PTHR44136:SF2	PFscan:PS50102	SUPFAM:SSF54928	UniParc:UPI000295DB8A
UniProt:M0SKQ1	MapMan:35.1	:	:	:	:

Description

RNA recognition motif containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G03340_001]

Coordinates

chr4:+:2662114..2663787

Molecular Weight (calculated)

20557.7 Da

IEP (calculated)

8.565

GRAVY (calculated)

-0.197

Length

183 amino acids

Sequence
(BLAST)

001: MLRCDELLGY QCLRHLNCKV YGYCGTELFS LIFSQVKTVK ISNISLSASQ RDIQEFFCFS GDIDYVENLK CKENSQLAYV TFRDSQGAET AMPLTGATIV
101: DLSVNVTPVE KYKLPPEAYR HKLVSPTISL FLSDPSPTNA AVKKAKDVIR SMLARALFSV RTHYSEPNPL TSSTNSYPLP RQR

Best Arabidopsis Sequence Match ( AT1G67950.3 )
(BLAST)

001: MSVTAAFIDS DQTQHNILMD SQSTVSGVKT VKISNVSLIV SKKDVKEFFS FSGDIQYVEM RSETQESQVA YVTFKDSQGA ETAMLLTGAV IADLRVSITP
101: AVNYQLPPEA LALDSQEHSF NGFSVKKAED VVNIMVGRGY ALGKDAMEKA KAFDDRHNLI SNASATIASL DDKMGLSEKL SIGTTVVNEK LRDIDERYQV
201: REITKSALAA AEETAISART ALMANPYVSS GASWFSNAFG AVTKAVKEKV ENGGEGRKEI ITLDPSSPKV PAVVPVKLG

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4HVJ1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.