CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH49688	Soybean	nucleus	93.87	93.87
VIT_01s0011g06050.t01	Wine grape	cytosol	62.26	67.96
Zm00001d033766_P002	Maize	cytosol, nucleus, plastid	54.52	59.72
Zm00001d013419_P001	Maize	cytosol, nucleus, plastid	53.87	59.01
TraesCS4B01G049100.1	Wheat	cytosol, nucleus, plastid	53.87	58.8
TraesCS4A01G265800.1	Wheat	cytosol, nucleus, plastid	53.87	58.8
GSMUA_Achr4P00600_001	Banana	cytosol, nucleus, plastid	59.35	58.79
TraesCS4D01G049200.1	Wheat	cytosol, nucleus, plastid	53.55	58.45
Os03t0713600-01	Rice	cytosol	53.55	58.45
OQU91106	Sorghum	cytosol, mitochondrion, nucleus, plastid	53.87	57.0
AT1G67950.2	Thale cress	cytosol	49.03	54.48
CDY01872	Canola	cytosol, plastid	49.35	53.87
KRH74377	Soybean	endoplasmic reticulum	47.1	52.33
KRH39571	Soybean	nucleus	46.77	51.79
HORVU4Hr1G008120.3	Barley	plastid	53.55	50.92
EES09901	Sorghum	plastid	44.19	44.48
Zm00001d053093_P001	Maize	cytosol, plastid	44.19	43.22
KRH24024	Soybean	nucleus	40.32	42.81
Os11t0549537-00	Rice	mitochondrion, plastid	32.9	42.15
KRG94865	Soybean	cytosol	32.58	40.89
GSMUA_Achr4P03340_001	Banana	nucleus	23.87	40.44
KRH06674	Soybean	cytosol	35.81	40.22
KRH01160	Soybean	cytosol, nucleus, plastid	27.42	33.33
KRH40110	Soybean	cytosol	27.42	32.95
KRH69305	Soybean	nucleus	28.71	30.58

Protein Annotations

EntrezGene:100812665	Gene3D:3.30.70.330	MapMan:35.1	EMBL:ACUP02000767	EMBL:BT097306	UniProt:C6TI28
EnsemblPlantsGene:GLYMA_02G086600	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504
InterPro:IPR012677	EnsemblPlants:KRH70369	ProteinID:KRH70369	ProteinID:KRH70369.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR44136	PANTHER:PTHR44136:SF2	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI0001B169AB	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:7539857..7543358

Molecular Weight (calculated)

33675.7 Da

IEP (calculated)

5.111

GRAVY (calculated)

-0.303

Length

310 amino acids

Sequence
(BLAST)

001: MSAMVEHTDQ RAEAIPQSTA APNWTIHVSD IKTVKVSNIS LVTFKKDIEE FFSFSGDIRY IEMQRESGHT QVAYVTFKDT QGADTAVLLT GSKIGDLYVT
101: ITPVEKYQLP PEALPSSPTN QSPDAVKKAE DVMSTMLAKG FILGKDAINK AKAFDEHHQL TSNASSTVAS IDRKIGLSDK LSFGTAVFNG KVREMDERYQ
201: LSEMTKSAMA AAEQKASSAG SAIMSNPYVK SGASWFSSAF TAIAKAAEDV STMTKEKVEQ AVVERNEIIY GERKGTVDEF AKTHLEEASD IGPAVVPVNS
301: DDDRKLATIL

Best Arabidopsis Sequence Match ( AT1G67950.3 )
(BLAST)

001: MSVTAAFIDS DQTQHNILMD SQSTVSGVKT VKISNVSLIV SKKDVKEFFS FSGDIQYVEM RSETQESQVA YVTFKDSQGA ETAMLLTGAV IADLRVSITP
101: AVNYQLPPEA LALDSQEHSF NGFSVKKAED VVNIMVGRGY ALGKDAMEKA KAFDDRHNLI SNASATIASL DDKMGLSEKL SIGTTVVNEK LRDIDERYQV
201: REITKSALAA AEETAISART ALMANPYVSS GASWFSNAFG AVTKAVKEKV ENGGEGRKEI ITLDPSSPKV PAVVPVKLG

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4HVJ1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.