CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40110	Soybean	cytosol	97.25	96.12
Solyc02g067390.2.1	Tomato	cytosol	58.82	58.82
PGSC0003DMT400017749	Potato	cytosol	58.82	58.82
Bra001017.1-P	Field mustard	cytosol, nucleus, plastid	52.94	53.57
CDX74287	Canola	cytosol	52.94	53.57
AT3G01210.1	Thale cress	cytosol	52.16	53.41
CDX91958	Canola	cytosol, nucleus, plastid	52.55	53.17
GSMUA_Achr3P19960_001	Banana	cytosol	49.02	51.65
TraesCS2D01G523400.1	Wheat	nucleus	46.67	48.77
TraesCS2B01G551100.1	Wheat	nucleus	46.27	48.36
TraesCS2A01G521600.1	Wheat	nucleus	45.49	47.54
HORVU2Hr1G115210.1	Barley	cytosol, nucleus, plastid	45.88	46.61
Zm00001d026425_P003	Maize	cytosol	44.31	46.31
EES12950	Sorghum	cytosol, nucleus, plastid	43.14	45.08
KRH69305	Soybean	nucleus	50.98	44.67
Zm00001d002122_P007	Maize	cytosol, nucleus, plastid	42.35	43.37
Os04t0641400-02	Rice	plastid	47.84	42.51
KRH74377	Soybean	endoplasmic reticulum	34.51	31.54
KRH39571	Soybean	nucleus	34.51	31.43
KRH24024	Soybean	nucleus	32.55	28.42
KRH06674	Soybean	cytosol	30.59	28.26
KRH49688	Soybean	nucleus	33.73	27.74
KRH70369	Soybean	cytosol	33.33	27.42
KRG94865	Soybean	cytosol	25.88	26.72

Protein Annotations

EntrezGene:100784005	Gene3D:3.30.70.330	MapMan:35.1	EMBL:ACUP02011502	EnsemblPlantsGene:GLYMA_18G258600	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	UniProt:I1N4C4	InterPro:IPR000504	InterPro:IPR012677
ProteinID:KRH01159.1	EnsemblPlants:KRH01160	ProteinID:KRH01160	ProteinID:KRH01160.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR44136	PANTHER:PTHR44136:SF1	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI000233E9D1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:54400952..54405968

Molecular Weight (calculated)

27369.2 Da

IEP (calculated)

5.319

GRAVY (calculated)

-0.031

Length

255 amino acids

Sequence
(BLAST)

001: MYSGGYTALV TNLSPRATED DVRNFFTYCG LIEHIEILRS GENASTAYVT YRDAYALETA LLLNGSMILD QCIFISRYEA YVNDYDNWSS HASKPEYSIT
101: TSQDVHMDKF VGSPGEALTM AQVVVKTMVA KGYVLGKDAF VMAKAFDESH SVSSTAASKV AELSNKIGLT DTINSGIETF KSVDEKYHVT DFTKSAATVT
201: GTTAIVVASV TGKAAVAAGT AIANSSYFAK GALWVSDMLT RAAKTAADLG QNEKK

Best Arabidopsis Sequence Match ( AT1G14340.1 )
(BLAST)

001: MDHQFGYGVE VTGLSPSVTH NDLIDFFSFS GTIQDIDIVR SGEQACTAYV MFKDSYSQET AVLLTGATIL DQRVCITRWG QHHEEFDFWN ATSRGFEDES
101: DSQHYAQRSE FNAGEAVTKA QEVVKIMLAT GFVLGKDALS KAKAFDESHG VSAAAVARVS QLEQRIGLTD KIFTGLEAVR MTDQRYHVSD TAKSAVFATG
201: RTAAAAATSV VNSSYFSSGA LWLSGALERA AKAASDLGTR GSRQ

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q949S4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.