Factsheet for PGSC0003DMT400017749

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g067390.2.1	Tomato	cytosol	94.9	94.9
KRH01160	Soybean	cytosol, nucleus, plastid	58.82	58.82
KRH40110	Soybean	cytosol	58.82	58.14
GSMUA_Achr3P19960_001	Banana	cytosol	54.51	57.44
PGSC0003DMT400065786	Potato	cytosol, nucleus, plastid	54.51	56.73
AT3G01210.1	Thale cress	cytosol	50.2	51.41
Bra001017.1-P	Field mustard	cytosol, nucleus, plastid	49.8	50.4
CDX74287	Canola	cytosol	49.8	50.4
CDX91958	Canola	cytosol, nucleus, plastid	49.8	50.4
TraesCS2D01G523400.1	Wheat	nucleus	47.45	49.59
TraesCS2B01G551100.1	Wheat	nucleus	47.06	49.18
TraesCS2A01G521600.1	Wheat	nucleus	46.27	48.36
Zm00001d026425_P003	Maize	cytosol	45.49	47.54
HORVU2Hr1G115210.1	Barley	cytosol, nucleus, plastid	46.67	47.41
EES12950	Sorghum	cytosol, nucleus, plastid	43.92	45.9
Zm00001d002122_P007	Maize	cytosol, nucleus, plastid	44.71	45.78
Os04t0641400-02	Rice	plastid	48.63	43.21
PGSC0003DMT400008196	Potato	cytosol, mitochondrion, nucleus	36.86	33.81
PGSC0003DMT400018578	Potato	cytosol	34.9	32.36
PGSC0003DMT400038377	Potato	cytosol	34.12	30.96
PGSC0003DMT400069547	Potato	nucleus	34.12	25.59

Protein Annotations

EntrezGene:102605891	Gene3D:3.30.70.330	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	UniProt:M1A9E2	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
EnsemblPlantsGene:PGSC0003DMG400006894	PGSC:PGSC0003DMG400006894	EnsemblPlants:PGSC0003DMT400017749	PFscan:PS50102	PANTHER:PTHR44136	PANTHER:PTHR44136:SF1
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002967554	RefSeq:XP_006357116.1
SEG:seg	:	:	:	:	:

Description

Nucleic acid binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400006894]

Coordinates

chr2:+:25930821..25936500

Molecular Weight (calculated)

27631.5 Da

IEP (calculated)

4.884

GRAVY (calculated)

-0.137

Length

255 amino acids

Sequence
(BLAST)

001: MYLGHYTAEV TSLSTKATEK DVDEFFSHCG EIEQVEIIRL SEYASIAYVT FKDSYALETA ILLSGSTILD QCVRISRLEA HVDEDDPWNN YIDKVENGSS
101: SAVHTNQFVS TPGEAVTMAQ QVVETMIVKG YQLSKDALTK AKALDESYHV SSTAAAKVAD LSKRVGLTDK IQSGLETVKC VDEKYHLSEL TMSAASYTGK
201: TAVAAATAVV SSSYFSKGAF WVSDVLNRAA KVAADLGNNG VKKETVPIEM NQIGK

Best Arabidopsis Sequence Match ( AT3G01210.2 )
(BLAST)

001: MYPCGYVAQV TNLSPQATEK DVHRFFSHCG IVELVEITGC QGDALTAYVT FRDAYALDMA VLLSGATIVD QTVWISVYGV YLHESNNLRQ EEDYSVTVTR
101: SDAFASSPGE AITVAQQVVQ TMLAKGYVLS KDAIGKAKAL DESQRFSSLV ATKLAEISHY LGLTQNIQSS MELVRSADEK YHFSDFTKSA VLVTGTAAVA
201: AATITGKVAA AAATSVVNSR YFANGALWFS DALGRAAKAA AHIGGGGSN

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9MAD0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.