Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g076530.2.1 | Tomato | plastid | 97.51 | 97.51 |
| VIT_02s0012g01860.t01 | Wine grape | cytosol | 75.44 | 75.18 |
| GSMUA_Achr9P23330_001 | Banana | nucleus, peroxisome, plastid | 64.77 | 74.59 |
| KRH39571 | Soybean | nucleus | 72.24 | 72.5 |
| KRH74377 | Soybean | endoplasmic reticulum | 71.17 | 71.68 |
| PGSC0003DMT400008196 | Potato | cytosol, mitochondrion, nucleus | 69.04 | 69.78 |
| GSMUA_AchrUn_... | Banana | cytosol, extracellular, nucleus | 68.33 | 69.06 |
| CDY01476 | Canola | cytosol | 34.52 | 67.83 |
| Os06t0112400-01 | Rice | plasma membrane | 59.07 | 63.6 |
| CDY01477 | Canola | cytosol | 67.97 | 63.04 |
| CDX78795 | Canola | nucleus | 67.62 | 62.71 |
| CDY60787 | Canola | nucleus | 67.62 | 62.71 |
| Bra040177.1-P | Field mustard | nucleus | 67.26 | 62.58 |
| CDX90453 | Canola | cytosol | 67.97 | 61.81 |
| EER89059 | Sorghum | cytosol | 59.07 | 61.71 |
| Bra012646.1-P | Field mustard | nucleus | 68.33 | 61.54 |
| AT4G17720.1 | Thale cress | cytosol, nucleus, plastid | 67.97 | 61.02 |
| TraesCS4A01G458600.1 | Wheat | cytosol, nucleus, plastid | 56.94 | 60.15 |
| CDY01473 | Canola | nucleus | 42.35 | 60.1 |
| TraesCS7D01G027100.1 | Wheat | plastid | 56.58 | 59.77 |
| AT5G46870.1 | Thale cress | nucleus | 62.63 | 59.66 |
| HORVU7Hr1G003710.1 | Barley | cytosol | 55.52 | 59.32 |
| GSMUA_Achr5P14070_001 | Banana | cytosol, nucleus, plastid | 58.01 | 58.63 |
| Zm00001d045559_P002 | Maize | cytosol, endoplasmic reticulum, nucleus | 57.3 | 57.91 |
| CDY33486 | Canola | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 65.84 | 55.56 |
| Os04t0594400-01 | Rice | plasma membrane | 61.92 | 55.41 |
| EES12769 | Sorghum | cytosol | 61.92 | 55.41 |
| Zm00001d002475_P001 | Maize | extracellular | 61.57 | 55.1 |
| Zm00001d026206_P001 | Maize | cytosol, nucleus, plastid | 61.57 | 55.1 |
| Bra024988.1-P | Field mustard | vacuole | 64.41 | 54.35 |
| Bra012647.1-P | Field mustard | cytosol | 40.21 | 54.33 |
| CDX90455 | Canola | cytosol | 40.21 | 54.33 |
| GSMUA_Achr8P14700_001 | Banana | plastid | 58.72 | 54.1 |
| CDX77703 | Canola | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 64.06 | 53.73 |
| TraesCS2D01G444000.1 | Wheat | extracellular | 60.14 | 53.65 |
| TraesCS2A01G445100.1 | Wheat | extracellular | 60.5 | 53.63 |
| TraesCS2B01G466100.1 | Wheat | extracellular | 59.79 | 53.0 |
| PGSC0003DMT400069547 | Potato | nucleus | 62.99 | 52.06 |
| TraesCS7A01G030900.2 | Wheat | plastid | 56.58 | 50.48 |
| Zm00001d026150_P001 | Maize | cytosol | 41.28 | 48.33 |
| Zm00001d031612_P001 | Maize | cytosol | 41.28 | 48.33 |
| Zm00001d035920_P002 | Maize | extracellular, vacuole | 58.36 | 47.4 |
| Zm00001d054082_P001 | Maize | cytosol | 46.62 | 46.29 |
| PGSC0003DMT400018578 | Potato | cytosol | 42.7 | 43.64 |
| Os04t0624800-01 | Rice | nucleus | 56.23 | 42.02 |
| Zm00001d046992_P001 | Maize | cytosol | 48.04 | 41.28 |
| Zm00001d031493_P001 | Maize | cytosol, mitochondrion, plastid | 47.33 | 40.92 |
| TraesCS6D01G249000.1 | Wheat | nucleus, plastid | 54.8 | 40.31 |
| TraesCS6A01G265600.1 | Wheat | extracellular | 55.16 | 39.04 |
| PGSC0003DMT400065786 | Potato | cytosol, nucleus, plastid | 33.81 | 38.78 |
| TraesCS6B01G292900.1 | Wheat | endoplasmic reticulum, extracellular | 54.45 | 38.54 |
| OQU85574 | Sorghum | nucleus | 53.02 | 38.11 |
| Zm00001d051524_P002 | Maize | nucleus | 52.67 | 36.72 |
| Zm00001d014267_P001 | Maize | nucleus | 51.96 | 34.6 |
| PGSC0003DMT400017749 | Potato | cytosol | 30.96 | 34.12 |
| Zm00001d046215_P001 | Maize | cytosol | 36.3 | 31.88 |
Protein Annotations
| EntrezGene:102581105 | Gene3D:3.30.70.330 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | UniProt:M1B6S0 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| EnsemblPlantsGene:PGSC0003DMG400014809 | PGSC:PGSC0003DMG400014809 | EnsemblPlants:PGSC0003DMT400038377 | PFscan:PS50102 | PANTHER:PTHR44136 | PANTHER:PTHR44136:SF5 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000295BC8F | RefSeq:XP_006352893.1 |
Description
Nucleic acid binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400014809]
Coordinates
chr8:-:49162556..49167911
Molecular Weight (calculated)
29935.5 Da
IEP (calculated)
6.305
GRAVY (calculated)
-0.216
Length
281 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVKTVKVSN VSLGASERDI KEFFSFSGDI EYVEMQSDTE RSQIAYVTFN DSQGADTAVL LSGATIVDMS VTVTLDPVYQ LPPTAFTASV PTAKKSAGNS
101: ESAFQKAEDV VSSMLAKGYI LGKDAVGKAK SFDEKHQLTS TATAKVASLD KKIGLTEKIS IGTSIVNDKV REVDQKLQVS DKAKSAFSAA EQKVSTAGSA
201: IMKNRYVLTG TTWVAGAFSK VAKAAGEVGQ MTKEKVGMTE DEQRQKMVTD FAQVHLSESP IASEFTEHQP AKPAPAQGLV L
101: ESAFQKAEDV VSSMLAKGYI LGKDAVGKAK SFDEKHQLTS TATAKVASLD KKIGLTEKIS IGTSIVNDKV REVDQKLQVS DKAKSAFSAA EQKVSTAGSA
201: IMKNRYVLTG TTWVAGAFSK VAKAAGEVGQ MTKEKVGMTE DEQRQKMVTD FAQVHLSESP IASEFTEHQP AKPAPAQGLV L
001: MTMTTVKVSN VSLGATDRDL KEFFSFSGDI LYLETQSETE RTKLAYVTFK DLQGAETAVL LSGATIVDSS VIVSMAPDYQ LSPEALASLE PKDSNKSPKA
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP
Arabidopsis Description
Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8LA96]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.