Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
21132161
endoplasmic reticulum: 27224218 endoplasmic reticulum: 28499913 |
msms PMID:
21132161
doi
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH39571 | Soybean | nucleus | 95.7 | 95.36 |
| VIT_02s0012g01860.t01 | Wine grape | cytosol | 75.63 | 74.82 |
| GSMUA_AchrUn_... | Banana | cytosol, extracellular, nucleus | 73.48 | 73.74 |
| GSMUA_Achr9P23330_001 | Banana | nucleus, peroxisome, plastid | 62.37 | 71.31 |
| Solyc08g076530.2.1 | Tomato | plastid | 71.68 | 71.17 |
| PGSC0003DMT400038377 | Potato | cytosol | 71.68 | 71.17 |
| CDY01476 | Canola | cytosol | 32.97 | 64.34 |
| CDY01477 | Canola | cytosol | 68.82 | 63.37 |
| Os06t0112400-01 | Rice | plasma membrane | 59.14 | 63.22 |
| TraesCS4A01G458600.1 | Wheat | cytosol, nucleus, plastid | 60.22 | 63.16 |
| HORVU7Hr1G003710.1 | Barley | cytosol | 59.5 | 63.12 |
| TraesCS7D01G027100.1 | Wheat | plastid | 59.86 | 62.78 |
| AT5G46870.1 | Thale cress | nucleus | 66.31 | 62.71 |
| CDY60787 | Canola | nucleus | 68.1 | 62.71 |
| AT4G17720.1 | Thale cress | cytosol, nucleus, plastid | 70.25 | 62.62 |
| Bra040177.1-P | Field mustard | nucleus | 67.74 | 62.58 |
| CDX90453 | Canola | cytosol | 69.18 | 62.46 |
| EER89059 | Sorghum | cytosol | 60.22 | 62.45 |
| CDX78795 | Canola | nucleus | 67.74 | 62.38 |
| Bra012646.1-P | Field mustard | nucleus | 69.53 | 62.18 |
| Zm00001d045559_P002 | Maize | cytosol, endoplasmic reticulum, nucleus | 59.5 | 59.71 |
| CDY01473 | Canola | nucleus | 41.22 | 58.08 |
| GSMUA_Achr8P14700_001 | Banana | plastid | 61.65 | 56.39 |
| GSMUA_Achr5P14070_001 | Banana | cytosol, nucleus, plastid | 55.91 | 56.12 |
| Zm00001d026206_P001 | Maize | cytosol, nucleus, plastid | 62.72 | 55.73 |
| CDX90455 | Canola | cytosol | 40.86 | 54.81 |
| Bra012647.1-P | Field mustard | cytosol | 40.86 | 54.81 |
| CDY33486 | Canola | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 65.23 | 54.65 |
| CDX77703 | Canola | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 65.59 | 54.63 |
| EES12769 | Sorghum | cytosol | 60.93 | 54.14 |
| Bra024988.1-P | Field mustard | vacuole | 64.52 | 54.05 |
| Zm00001d002475_P001 | Maize | extracellular | 60.57 | 53.82 |
| Os04t0594400-01 | Rice | plasma membrane | 60.57 | 53.82 |
| KRH24024 | Soybean | nucleus | 55.91 | 53.42 |
| TraesCS7A01G030900.2 | Wheat | plastid | 59.86 | 53.02 |
| TraesCS2D01G444000.1 | Wheat | extracellular | 59.86 | 53.02 |
| TraesCS2B01G466100.1 | Wheat | extracellular | 59.5 | 52.37 |
| TraesCS2A01G445100.1 | Wheat | extracellular | 59.14 | 52.05 |
| Zm00001d035920_P002 | Maize | extracellular, vacuole | 62.01 | 50.0 |
| Zm00001d054082_P001 | Maize | cytosol | 48.39 | 47.7 |
| Zm00001d031612_P001 | Maize | cytosol | 40.86 | 47.5 |
| Zm00001d026150_P001 | Maize | cytosol | 40.86 | 47.5 |
| KRH70369 | Soybean | cytosol | 52.33 | 47.1 |
| KRH49688 | Soybean | nucleus | 51.61 | 46.45 |
| KRG94865 | Soybean | cytosol | 37.99 | 42.91 |
| Zm00001d046992_P001 | Maize | cytosol | 49.82 | 42.51 |
| KRH06674 | Soybean | cytosol | 41.94 | 42.39 |
| Os04t0624800-01 | Rice | nucleus | 56.99 | 42.29 |
| TraesCS6D01G249000.1 | Wheat | nucleus, plastid | 56.27 | 41.1 |
| TraesCS6A01G265600.1 | Wheat | extracellular | 56.99 | 40.05 |
| Zm00001d031493_P001 | Maize | cytosol, mitochondrion, plastid | 46.59 | 40.0 |
| TraesCS6B01G292900.1 | Wheat | endoplasmic reticulum, extracellular | 55.91 | 39.29 |
| OQU85574 | Sorghum | nucleus | 54.84 | 39.13 |
| Zm00001d051524_P002 | Maize | nucleus | 53.41 | 36.97 |
| Zm00001d014267_P001 | Maize | nucleus | 52.69 | 34.83 |
| KRH01160 | Soybean | cytosol, nucleus, plastid | 31.54 | 34.51 |
| KRH40110 | Soybean | cytosol | 31.9 | 34.5 |
| KRH69305 | Soybean | nucleus | 34.77 | 33.33 |
| Zm00001d046215_P001 | Maize | cytosol | 35.13 | 30.62 |
Protein Annotations
| EntrezGene:100809613 | Gene3D:3.30.70.330 | MapMan:35.1 | EMBL:ACUP02000021 | EnsemblPlantsGene:GLYMA_01G015500 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | UniProt:I1J4S9 | InterPro:IPR000504 | InterPro:IPR012677 |
| EnsemblPlants:KRH74377 | ProteinID:KRH74377 | ProteinID:KRH74377.1 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 |
| PANTHER:PTHR44136 | PANTHER:PTHR44136:SF5 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI00023375ED | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr1:-:1516447..1519964
Molecular Weight (calculated)
29771.0 Da
IEP (calculated)
6.315
GRAVY (calculated)
-0.371
Length
279 amino acids
Sequence
(BLAST)
(BLAST)
001: MTIKTVKVSN VSLGATEQDI KEFFSFSGDI EYVELRSHDE RSQIAYITFK DSQGAETALL LSGATIVDMP VTITQDPDYQ LPPAALASSV RETQTPGGAD
101: SALRKAEDVV SGMLAKGFIL GKDAVNKAKT FDEKHQLSST ASAKVASFDQ KIGLSEKISA GATVVSDRVR EVDQKFQVSE KTKSAFAAAE QTVSNAGSAL
201: MKNRYVLTGA SWVTGAFSKV SKAAGEVGQK TKEKVEGAEE HQKRKVEDQY AQVLSESPKA AEASEQKSSK PAPAQGLIL
101: SALRKAEDVV SGMLAKGFIL GKDAVNKAKT FDEKHQLSST ASAKVASFDQ KIGLSEKISA GATVVSDRVR EVDQKFQVSE KTKSAFAAAE QTVSNAGSAL
201: MKNRYVLTGA SWVTGAFSKV SKAAGEVGQK TKEKVEGAEE HQKRKVEDQY AQVLSESPKA AEASEQKSSK PAPAQGLIL
001: MTMTTVKVSN VSLGATDRDL KEFFSFSGDI LYLETQSETE RTKLAYVTFK DLQGAETAVL LSGATIVDSS VIVSMAPDYQ LSPEALASLE PKDSNKSPKA
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP
Arabidopsis Description
Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8LA96]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.