CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH01160	Soybean	cytosol, nucleus, plastid	96.12	97.25
Solyc02g067390.2.1	Tomato	cytosol	58.53	59.22
PGSC0003DMT400017749	Potato	cytosol	58.14	58.82
AT3G01210.1	Thale cress	cytosol	52.33	54.22
Bra001017.1-P	Field mustard	cytosol, nucleus, plastid	52.71	53.97
CDX74287	Canola	cytosol	52.71	53.97
CDX91958	Canola	cytosol, nucleus, plastid	52.33	53.57
GSMUA_Achr3P19960_001	Banana	cytosol	48.06	51.24
TraesCS2D01G523400.1	Wheat	nucleus	46.51	49.18
TraesCS2B01G551100.1	Wheat	nucleus	46.12	48.77
TraesCS2A01G521600.1	Wheat	nucleus	45.35	47.95
HORVU2Hr1G115210.1	Barley	cytosol, nucleus, plastid	46.12	47.41
Zm00001d026425_P003	Maize	cytosol	44.19	46.72
EES12950	Sorghum	cytosol, nucleus, plastid	43.02	45.49
KRH69305	Soybean	nucleus	50.78	45.02
Zm00001d002122_P007	Maize	cytosol, nucleus, plastid	42.25	43.78
Os04t0641400-02	Rice	plastid	47.29	42.51
KRH74377	Soybean	endoplasmic reticulum	34.5	31.9
KRH39571	Soybean	nucleus	34.5	31.79
KRH06674	Soybean	cytosol	31.01	28.99
KRH24024	Soybean	nucleus	32.56	28.77
KRH49688	Soybean	nucleus	33.33	27.74
KRG94865	Soybean	cytosol	26.36	27.53
KRH70369	Soybean	cytosol	32.95	27.42

Protein Annotations

EntrezGene:100797381	Gene3D:3.30.70.330	MapMan:35.1	EMBL:ACUP02006021	EnsemblPlantsGene:GLYMA_09G239200	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	UniProt:I1L5Y7	InterPro:IPR000504	InterPro:IPR012677
ProteinID:KRH40109.1	EnsemblPlants:KRH40110	ProteinID:KRH40110	ProteinID:KRH40110.1	ProteinID:KRH40111.1	ProteinID:KRH40112.1
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44136	PANTHER:PTHR44136:SF1	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002338609	SEG:seg	:

Description

hypothetical protein

Coordinates

chr9:+:46173911..46178469

Molecular Weight (calculated)

27677.5 Da

IEP (calculated)

5.082

GRAVY (calculated)

-0.014

Length

258 amino acids

Sequence
(BLAST)

001: MTSMYSGGYT ALVTNLSPRA TEDDVRNFFT YCGLIEHIEI LRSGENAPTA YVTYRDAYAL ETALLLNGSM ILDQCIFISR YEAYVNDYDN WSNHASNPEY
101: SITTSQDVHM DKFVASPGEA LTMAQVVVKT MVAKGYVLGK DAFVMAKAFD ESHSVSSTAA TKVAELSNKI GLTDTINSGI ETFKSVDEKY HVTDFTKSAA
201: TVTGTTAIVV ASVTGKAAVA AGTAIANSSY FAKGALWVSD VLTRAAKAAA DLGQNEKK

Best Arabidopsis Sequence Match ( AT3G01210.2 )
(BLAST)

001: MYPCGYVAQV TNLSPQATEK DVHRFFSHCG IVELVEITGC QGDALTAYVT FRDAYALDMA VLLSGATIVD QTVWISVYGV YLHESNNLRQ EEDYSVTVTR
101: SDAFASSPGE AITVAQQVVQ TMLAKGYVLS KDAIGKAKAL DESQRFSSLV ATKLAEISHY LGLTQNIQSS MELVRSADEK YHFSDFTKSA VLVTGTAAVA
201: AATITGKVAA AAATSVVNSR YFANGALWFS DALGRAAKAA AHIGGGGSN

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9MAD0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.