CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06674	Soybean	cytosol	92.31	82.61
VIT_08s0032g00290.t01	Wine grape	cytosol	71.26	65.67
Solyc10g076890.1.1	Tomato	cytosol	70.45	63.74
PGSC0003DMT400018578	Potato	cytosol	70.45	63.27
GSMUA_Achr4P10680_001	Banana	cytosol	65.99	61.51
AT5G32450.1	Thale cress	cytosol	64.78	59.93
GSMUA_Achr8P04640_001	Banana	cytosol	63.16	58.65
EER93456	Sorghum	cytosol	65.18	58.33
CDY38176	Canola	cytosol	61.94	58.17
Bra039914.1-P	Field mustard	cytosol	61.54	57.79
Os03t0748900-01	Rice	cytosol	64.78	57.55
CDY25131	Canola	cytosol, mitochondrion, nucleus, plastid	61.54	57.14
TraesCS5A01G387800.1	Wheat	cytosol	62.75	56.99
TraesCS5B01G392900.1	Wheat	cytosol	61.94	56.25
Zm00001d013271_P003	Maize	cytosol	63.97	56.23
TraesCS5D01G397700.2	Wheat	cytosol	60.73	54.15
HORVU5Hr1G095000.1	Barley	nucleus	61.13	40.92
GSMUA_AchrUn_...	Banana	cytosol	25.91	39.75
KRH74377	Soybean	endoplasmic reticulum	42.91	37.99
KRH39571	Soybean	nucleus	41.3	36.43
KRH49688	Soybean	nucleus	41.7	33.23
KRH70369	Soybean	cytosol	40.89	32.58
KRH24024	Soybean	nucleus	38.46	32.53
Zm00001d033453_P001	Maize	cytosol	40.89	30.06
KRH69305	Soybean	nucleus	34.01	28.87
CDY60084	Canola	cytosol, nucleus, plastid	8.5	27.63
KRH40110	Soybean	cytosol	27.53	26.36
KRH01160	Soybean	cytosol, nucleus, plastid	26.72	25.88

Protein Annotations

EMBL:ACUP02012047	EnsemblPlants:KRG94865	EnsemblPlantsGene:GLYMA_19G114000	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:RBD_domain_sf	PANTHER:PTHR44136	PANTHER:PTHR44136:SF3	ProteinID:KRG94865	ProteinID:KRG94865.1	SEG:seg
SUPFAM:SSF54928	UniParc:UPI0006EDFC15	UniProt:A0A0R0EVG7	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr19:-:36872837..36875937

Molecular Weight (calculated)

26370.6 Da

IEP (calculated)

10.005

GRAVY (calculated)

-0.141

Length

247 amino acids

Sequence
(BLAST)

001: MIAFCVSVCC SEDGKSKTAY VTFKDPKALE IALLLSGATI VDQVVKITPA ENYVPNREME EVRVVENAIN VAPSENSENV SLSIEEGKAS PTNRRIYLSK
101: AQDAVTSMLA KGSAIRQDAV NKAKAFDEKH QLTANASAKV ISLDKRVGLT EKLTVGIAAV NQKVKSVDQR LQVSDKTMAA IIAAERKINN TGSAVKTSRY
201: VTAGTAWFNG AFSKVAKAGH VASTKTREKF HLAVSNLTAK EPSVAAA

Best Arabidopsis Sequence Match ( AT5G32450.1 )
(BLAST)

001: MQTTRSVQVN NVSDLATERE IHEFFSFSGD IEHIEIQKEF GQSRIAFVTF TDPKALEIAL LLSGATIVDQ IVTITRAENY VQRRETQEVR MLDNAMPLGL
101: QESTTQTKTN MDGNSRAYVS KAQDVVATVL AKGSALGQDA VNKAKAFDEK HQLRANASAK VSSFDKRVGL TEKLSVGISA VNEKVKSVDQ KLQVSDKTMA
201: AIFAAERKLN DTGSAVKSSR YVTAGAAWFS GAFSKVARVG QVAGSKTKEK FNLAVSNMSS KDTPIAV

Arabidopsis Description

Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8L9M9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.