Factsheet for HORVU5Hr1G095000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G392900.1	Wheat	cytosol	72.36	98.16
TraesCS5A01G387800.1	Wheat	cytosol	71.0	96.32
TraesCS5D01G397700.2	Wheat	cytosol	69.92	93.14
Os03t0748900-01	Rice	cytosol	65.31	86.69
EER93456	Sorghum	cytosol	63.14	84.42
Zm00001d013271_P003	Maize	cytosol	62.06	81.49
GSMUA_Achr4P10680_001	Banana	cytosol	49.05	68.3
VIT_08s0032g00290.t01	Wine grape	cytosol	47.7	65.67
GSMUA_Achr8P04640_001	Banana	cytosol	47.15	65.41
Solyc10g076890.1.1	Tomato	cytosol	48.24	65.2
PGSC0003DMT400018578	Potato	cytosol	48.24	64.73
CDY38176	Canola	cytosol	45.26	63.5
Bra039914.1-P	Field mustard	cytosol	45.26	63.5
KRH06674	Soybean	cytosol	46.88	62.68
CDY25131	Canola	cytosol, mitochondrion, nucleus, plastid	44.72	62.03
KRG94865	Soybean	cytosol	40.92	61.13
AT5G32450.1	Thale cress	cytosol	42.82	59.18
CDY60084	Canola	cytosol, nucleus, plastid	10.03	48.68
GSMUA_AchrUn_...	Banana	cytosol	19.24	44.1
HORVU7Hr1G003710.1	Barley	cytosol	30.89	43.35
HORVU4Hr1G008120.3	Barley	plastid	32.25	36.5
Zm00001d033453_P001	Maize	cytosol	31.98	35.12
HORVU2Hr1G115210.1	Barley	cytosol, nucleus, plastid	23.85	35.06

Protein Annotations

EnsemblPlants:HORVU5Hr1G095000.1	EnsemblPlantsGene:HORVU5Hr1G095000	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR32343	PANTHER:PTHR32343:SF9	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI000B474C39	UniProt:A0A287SCA4	MapMan:35.1	:	:

Description

No Description!

Coordinates

chrchr5H:+:597474346..597478238

Molecular Weight (calculated)

40010.2 Da

IEP (calculated)

10.955

GRAVY (calculated)

-0.532

Length

369 amino acids

Sequence
(BLAST)

001: HARTRASERT ARGEKKSRQP HSSGESRAES TAQPRSGGRR THATPLQIAC LQPSGAPNPT QPPPATLPRP DPPAPPRPPT RSRLPFISFF SLPRRRAMEE
101: GRRGTRTVRV RNISDLAGER EVREFFSFSG EIDHVDIRPD GVAAGRTAYV TFKDSKALEI ALLLSGATIV DRVVNITSAE DYIYIPVNEQ QLVVNEVTST
201: APTADLEQPT EANTSPTSVY ASKAHDVMTT VIARGSAIRQ DAVNKAKSFD EKHQLRANAS ARISSFDRRV GLSEKLNTGI SVVNEKVKTV DQRLHVSDKT
301: MAALLAAERK LNDTGSAMKT NRYVSAGTSW LNGAFSKVAK ASHVAGSRTR EKFQIAVSNI SAKGPAVVA

Best Arabidopsis Sequence Match ( AT5G32450.1 )
(BLAST)

001: MQTTRSVQVN NVSDLATERE IHEFFSFSGD IEHIEIQKEF GQSRIAFVTF TDPKALEIAL LLSGATIVDQ IVTITRAENY VQRRETQEVR MLDNAMPLGL
101: QESTTQTKTN MDGNSRAYVS KAQDVVATVL AKGSALGQDA VNKAKAFDEK HQLRANASAK VSSFDKRVGL TEKLSVGISA VNEKVKSVDQ KLQVSDKTMA
201: AIFAAERKLN DTGSAVKSSR YVTAGAAWFS GAFSKVARVG QVAGSKTKEK FNLAVSNMSS KDTPIAV

Arabidopsis Description

Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8L9M9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.