Factsheet for VIT_08s0032g00290.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g076890.1.1	Tomato	cytosol	77.24	75.82
PGSC0003DMT400018578	Potato	cytosol	77.24	75.27
GSMUA_Achr4P10680_001	Banana	cytosol	72.01	72.83
KRH06674	Soybean	cytosol	75.0	72.83
KRG94865	Soybean	cytosol	65.67	71.26
AT5G32450.1	Thale cress	cytosol	70.15	70.41
Bra039914.1-P	Field mustard	cytosol	67.91	69.2
CDY38176	Canola	cytosol	67.91	69.2
CDY25131	Canola	cytosol, mitochondrion, nucleus, plastid	67.16	67.67
GSMUA_Achr8P04640_001	Banana	cytosol	66.42	66.92
EER93456	Sorghum	cytosol	67.91	65.94
TraesCS5B01G392900.1	Wheat	cytosol	66.42	65.44
Os03t0748900-01	Rice	cytosol	67.54	65.11
TraesCS5A01G387800.1	Wheat	cytosol	65.67	64.71
Zm00001d013271_P003	Maize	cytosol	67.16	64.06
TraesCS5D01G397700.2	Wheat	cytosol	65.3	63.18
CDY60084	Canola	cytosol, nucleus, plastid	15.67	55.26
HORVU5Hr1G095000.1	Barley	nucleus	65.67	47.7
VIT_02s0012g01860.t01	Wine grape	cytosol	46.64	44.33
GSMUA_AchrUn_...	Banana	cytosol	26.49	44.1
VIT_01s0011g06050.t01	Wine grape	cytosol	44.03	41.55
VIT_16s0039g01860.t01	Wine grape	cytosol, nucleus, plastid	42.54	41.16
VIT_01s0026g01970.t01	Wine grape	cytosol, nucleus, plastid	35.45	38.62
Zm00001d033453_P001	Maize	cytosol	38.43	30.65

Protein Annotations

EntrezGene:100246079	wikigene:100246079	Gene3D:3.30.70.330	MapMan:35.1	ProteinID:CBI39061	ProteinID:CBI39061.3
UniProt:D7U8J7	EMBL:FN596742	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	EntrezGene:LOC100246079	wikigene:LOC100246079	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR44136	PANTHER:PTHR44136:SF3	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	TIGR:TC60115	TIGR:TC61065	UniParc:UPI0001BE4C6E	ArrayExpress:VIT_08s0032g00290	EnsemblPlantsGene:VIT_08s0032g00290
EnsemblPlants:VIT_08s0032g00290.t01	unigene:Vvi.1530	RefSeq:XP_002265170	RefSeq:XP_002265170.2	:	:

Description

No Description!

Coordinates

chr8:-:3355749..3361653

Molecular Weight (calculated)

28740.2 Da

IEP (calculated)

8.466

GRAVY (calculated)

-0.159

Length

268 amino acids

Sequence
(BLAST)

001: MQTRTVQVGH VSDLAGEREI HEFFSFSGDI EHVEILRDSG QLRTAFVTFK DPKALEIALL LSGATIVDQV VTITPVENYV PTAEREVSIT DDAVCQVPDG
101: DVSPNAEGKA TSPNNGRVYV NKAQDVVTSM LAKGSAIGQD AMNKAKAFDE KHQLTASASA KVISFDRRVG LTEKLTVGIS VVNEKVKSVD QRLHVSDKTM
201: AALLAAERKL NNTGSAVKTS RYVTAGTTWL NGAFTKVAKA GQIAGTKTRE KFHLAVSNLT AKDPSIVV

Best Arabidopsis Sequence Match ( AT5G32450.1 )
(BLAST)

001: MQTTRSVQVN NVSDLATERE IHEFFSFSGD IEHIEIQKEF GQSRIAFVTF TDPKALEIAL LLSGATIVDQ IVTITRAENY VQRRETQEVR MLDNAMPLGL
101: QESTTQTKTN MDGNSRAYVS KAQDVVATVL AKGSALGQDA VNKAKAFDEK HQLRANASAK VSSFDKRVGL TEKLSVGISA VNEKVKSVDQ KLQVSDKTMA
201: AIFAAERKLN DTGSAVKSSR YVTAGAAWFS GAFSKVARVG QVAGSKTKEK FNLAVSNMSS KDTPIAV

Arabidopsis Description

Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8L9M9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.