Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P23330_001 | Banana | nucleus, peroxisome, plastid | 65.6 | 75.82 |
| KRH39571 | Soybean | nucleus | 75.18 | 75.71 |
| KRH74377 | Soybean | endoplasmic reticulum | 74.82 | 75.63 |
| Solyc08g076530.2.1 | Tomato | plastid | 75.18 | 75.44 |
| PGSC0003DMT400038377 | Potato | cytosol | 75.18 | 75.44 |
| VIT_16s0039g01860.t01 | Wine grape | cytosol, nucleus, plastid | 73.4 | 74.73 |
| GSMUA_AchrUn_... | Banana | cytosol, extracellular, nucleus | 73.05 | 74.1 |
| CDY01476 | Canola | cytosol | 34.04 | 67.13 |
| Os06t0112400-01 | Rice | plasma membrane | 62.06 | 67.05 |
| CDY01477 | Canola | cytosol | 70.57 | 65.68 |
| EER89059 | Sorghum | cytosol | 62.06 | 65.06 |
| CDX78795 | Canola | nucleus | 69.86 | 65.02 |
| CDX90453 | Canola | cytosol | 70.92 | 64.72 |
| CDY60787 | Canola | nucleus | 69.5 | 64.69 |
| Bra040177.1-P | Field mustard | nucleus | 69.15 | 64.57 |
| TraesCS4A01G458600.1 | Wheat | cytosol, nucleus, plastid | 60.64 | 64.29 |
| AT4G17720.1 | Thale cress | cytosol, nucleus, plastid | 71.28 | 64.22 |
| AT5G46870.1 | Thale cress | nucleus | 67.02 | 64.07 |
| TraesCS7D01G027100.1 | Wheat | plastid | 60.28 | 63.91 |
| HORVU7Hr1G003710.1 | Barley | cytosol | 59.22 | 63.5 |
| Bra012646.1-P | Field mustard | nucleus | 70.21 | 63.46 |
| Zm00001d045559_P002 | Maize | cytosol, endoplasmic reticulum, nucleus | 61.35 | 62.23 |
| CDY01473 | Canola | nucleus | 42.55 | 60.61 |
| GSMUA_Achr5P14070_001 | Banana | cytosol, nucleus, plastid | 59.22 | 60.07 |
| GSMUA_Achr8P14700_001 | Banana | plastid | 61.7 | 57.05 |
| Os04t0594400-01 | Rice | plasma membrane | 63.48 | 57.01 |
| CDY33486 | Canola | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 66.67 | 56.46 |
| Bra012647.1-P | Field mustard | cytosol | 41.49 | 56.25 |
| CDX90455 | Canola | cytosol | 41.49 | 56.25 |
| Zm00001d026206_P001 | Maize | cytosol, nucleus, plastid | 62.41 | 56.05 |
| CDX77703 | Canola | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 66.31 | 55.82 |
| EES12769 | Sorghum | cytosol | 62.06 | 55.73 |
| Zm00001d002475_P001 | Maize | extracellular | 61.7 | 55.41 |
| VIT_01s0011g06050.t01 | Wine grape | cytosol | 55.67 | 55.28 |
| Bra024988.1-P | Field mustard | vacuole | 65.25 | 55.26 |
| TraesCS2D01G444000.1 | Wheat | extracellular | 60.99 | 54.6 |
| TraesCS2B01G466100.1 | Wheat | extracellular | 60.99 | 54.26 |
| TraesCS7A01G030900.2 | Wheat | plastid | 60.28 | 53.97 |
| TraesCS2A01G445100.1 | Wheat | extracellular | 60.64 | 53.94 |
| Zm00001d035920_P002 | Maize | extracellular, vacuole | 63.12 | 51.45 |
| Zm00001d031612_P001 | Maize | cytosol | 41.84 | 49.17 |
| Zm00001d026150_P001 | Maize | cytosol | 41.84 | 49.17 |
| Zm00001d054082_P001 | Maize | cytosol | 47.87 | 47.7 |
| VIT_08s0032g00290.t01 | Wine grape | cytosol | 44.33 | 46.64 |
| Os04t0624800-01 | Rice | nucleus | 57.8 | 43.35 |
| Zm00001d046992_P001 | Maize | cytosol | 49.29 | 42.51 |
| TraesCS6D01G249000.1 | Wheat | nucleus, plastid | 56.38 | 41.62 |
| Zm00001d031493_P001 | Maize | cytosol, mitochondrion, plastid | 47.87 | 41.54 |
| TraesCS6A01G265600.1 | Wheat | extracellular | 56.38 | 40.05 |
| VIT_01s0026g01970.t01 | Wine grape | cytosol, nucleus, plastid | 34.75 | 39.84 |
| TraesCS6B01G292900.1 | Wheat | endoplasmic reticulum, extracellular | 56.03 | 39.8 |
| OQU85574 | Sorghum | nucleus | 54.96 | 39.64 |
| Zm00001d051524_P002 | Maize | nucleus | 53.9 | 37.72 |
| Zm00001d014267_P001 | Maize | nucleus | 53.19 | 35.55 |
| Zm00001d046215_P001 | Maize | cytosol | 36.88 | 32.5 |
Protein Annotations
| EntrezGene:100262521 | wikigene:100262521 | Gene3D:3.30.70.330 | MapMan:35.1 | ProteinID:CBI33844 | ProteinID:CBI33844.3 |
| UniProt:D7TTS9 | EMBL:FN596247 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | EntrezGene:LOC100262521 | wikigene:LOC100262521 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PFscan:PS50102 | PANTHER:PTHR44136 | PANTHER:PTHR44136:SF5 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | TIGR:TC55913 | TIGR:TC64281 | UniParc:UPI0001982BC0 | ArrayExpress:VIT_02s0012g01860 | EnsemblPlantsGene:VIT_02s0012g01860 |
| EnsemblPlants:VIT_02s0012g01860.t01 | InterPro:Vip1-like_RRM_plant | unigene:Vvi.17853 | RefSeq:XP_002278543 | RefSeq:XP_002278543.1 | SEG:seg |
Description
No Description!
Coordinates
chr2:+:8319488..8330101
Molecular Weight (calculated)
30384.9 Da
IEP (calculated)
8.403
GRAVY (calculated)
-0.416
Length
282 amino acids
Sequence
(BLAST)
(BLAST)
001: MPITTVKVSN VSLGATEQDI KEFFSFSGDI ECVEMQSDNE RSQIAYVTFK DMQGAETAIL LSGATIVDMS VTITPAPDYQ LPPAAASAPP LPKENKTPGR
101: AESAFRKTED VVSGMLAKGY ILGKDAVNKA KSFDEKHQLT STATSKVVSF DKKIGFTEKI SAGTSVVNEK VREVDHKFQV SDKTKSAFAA AEQKVSSAGS
201: AIMKNRYVFT GASWVTGAFN KVAKAAEEVG QKAKEKVGKS EDEQKRRVVE DFAQVHLSDS PKASASNEQH PYKPAPPQGL IL
101: AESAFRKTED VVSGMLAKGY ILGKDAVNKA KSFDEKHQLT STATSKVVSF DKKIGFTEKI SAGTSVVNEK VREVDHKFQV SDKTKSAFAA AEQKVSSAGS
201: AIMKNRYVFT GASWVTGAFN KVAKAAEEVG QKAKEKVGKS EDEQKRRVVE DFAQVHLSDS PKASASNEQH PYKPAPPQGL IL
001: MTMTTVKVSN VSLGATDRDL KEFFSFSGDI LYLETQSETE RTKLAYVTFK DLQGAETAVL LSGATIVDSS VIVSMAPDYQ LSPEALASLE PKDSNKSPKA
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP
Arabidopsis Description
Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8LA96]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.