CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER87703
EER93195
EES10859
EES18842
EES19652
EES19950
OQU87300
OQU88745
OQU89311

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17720.1	EES10859	AT3G11730.1	21798944
AT4G17720.1	EES18842	AT3G11730.1	21798944
AT4G17720.1	EER93195	AT3G46060.1	21798944
AT4G17720.1	EES19652	AT3G46060.1	21798944
AT4G17720.1	OQU88745	AT3G46060.1	21798944
AT4G17720.1	EER87703	AT4G25680.1	21798944
AT4G17720.1	EES19950	AT5G60860.1	21798944
AT4G17720.1	OQU87300	AT5G60860.1	21798944
AT4G17720.1	OQU89311	AT5G60860.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045559_P002	Maize	cytosol, endoplasmic reticulum, nucleus	94.05	91.01
Os06t0112400-01	Rice	plasma membrane	86.99	89.66
HORVU7Hr1G003710.1	Barley	cytosol	84.39	86.31
TraesCS7D01G027100.1	Wheat	plastid	84.76	85.71
TraesCS4A01G458600.1	Wheat	cytosol, nucleus, plastid	84.01	84.96
GSMUA_Achr9P23330_001	Banana	nucleus, peroxisome, plastid	70.63	77.87
Zm00001d035920_P002	Maize	extracellular, vacuole	94.05	73.12
TraesCS7A01G030900.2	Wheat	plastid	84.76	72.38
GSMUA_AchrUn_...	Banana	cytosol, extracellular, nucleus	72.49	70.14
Solyc03g097110.2.1	Tomato	nucleus	65.8	63.67
PGSC0003DMT400008196	Potato	cytosol, mitochondrion, nucleus	65.06	62.95
VIT_16s0039g01860.t01	Wine grape	cytosol, nucleus, plastid	64.31	62.45
CDY01476	Canola	cytosol	33.09	62.24
VIT_02s0012g01860.t01	Wine grape	cytosol	65.06	62.06
Bra023585.1-P	Field mustard	nucleus	58.36	62.06
AT5G16840.2	Thale cress	nucleus	59.11	61.15
KRH39571	Soybean	nucleus	63.2	60.71
Bra006373.1-P	Field mustard	cytosol	58.74	60.54
CDX78713	Canola	cytosol	58.74	60.54
KRH74377	Soybean	endoplasmic reticulum	62.45	60.22
CDX70721	Canola	cytosol	57.62	59.39
Solyc08g076530.2.1	Tomato	plastid	61.71	59.07
PGSC0003DMT400038377	Potato	cytosol	61.71	59.07
CDX69415	Canola	cytosol	56.51	58.46
Bra008589.1-P	Field mustard	cytosol	56.51	58.02
CDY01477	Canola	cytosol	60.97	54.13
Bra012646.1-P	Field mustard	nucleus	61.71	53.21
CDX78795	Canola	nucleus	59.85	53.14
CDX90453	Canola	cytosol	60.59	52.75
AT4G17720.1	Thale cress	cytosol, nucleus, plastid	61.34	52.72
Bra040177.1-P	Field mustard	nucleus	59.11	52.65
CDY60787	Canola	nucleus	59.11	52.48
EES12769	Sorghum	cytosol	59.85	51.27
AT5G46870.1	Thale cress	nucleus	56.13	51.19
OQU91106	Sorghum	cytosol, mitochondrion, nucleus, plastid	54.65	50.17
CDX85485	Canola	plastid	58.36	49.84
CDY16974	Canola	plastid	57.25	48.43
KRH24024	Soybean	nucleus	52.42	48.29
CDY01473	Canola	nucleus	35.32	47.98
PGSC0003DMT400069547	Potato	nucleus	59.48	47.06
CDX90455	Canola	cytosol	34.94	45.19
Bra012647.1-P	Field mustard	cytosol	34.94	45.19
CDX77703	Canola	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	55.76	44.78
Bra024988.1-P	Field mustard	vacuole	55.39	44.74
CDY33486	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	55.02	44.44
Solyc06g072770.2.1	Tomato	nucleus	59.85	44.23
EER93456	Sorghum	cytosol	44.24	43.12
EES09901	Sorghum	plastid	45.72	39.94
OQU85574	Sorghum	nucleus	54.65	37.6
CDY38083	Canola	nucleus	57.99	37.23
EES12950	Sorghum	cytosol, nucleus, plastid	31.97	35.25

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EntrezGene:8067912	UniProt:C5Z2Q0	EnsemblPlants:EER89059	ProteinID:EER89059
ProteinID:EER89059.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504
InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR32343	PANTHER:PTHR32343:SF10
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	EnsemblPlantsGene:SORBI_3010G008100	SUPFAM:SSF54928	unigene:Sbi.2474
UniParc:UPI0001A8999F	InterPro:Vip1-like_RRM_plant	RefSeq:XP_002437692.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr10:-:663570..666927

Molecular Weight (calculated)

28093.3 Da

IEP (calculated)

7.811

GRAVY (calculated)

-0.145

Length

269 amino acids

Sequence
(BLAST)

001: MAATAAEVPV EAPVRTVKVT NVSLSATVQD IKEFFSFSGD IEHVEMQSGD EWSQVAYVTF KDAQGAETAL LLSGATIVDL SVIIAPAPEY QPPPTYSAPP
101: MSGTRVAVGG DNTVVHKAED VVSSMLAKGF VLGKDAVGKA KAFDEKHGFT STAGAKVASI DKKIGLSDKI TTGTSLVTGK VKEMDQKFQV SDKTKSAFAA
201: AEQKVSSAGS AIMKNRYVFT GASWVTGAFN KVAKAATDVG TMTKEKMAAE EQQKGSGPSS GGHSYTPIR

Best Arabidopsis Sequence Match ( AT4G17720.1 )
(BLAST)

001: MTMTTVKVSN VSLGATDRDL KEFFSFSGDI LYLETQSETE RTKLAYVTFK DLQGAETAVL LSGATIVDSS VIVSMAPDYQ LSPEALASLE PKDSNKSPKA
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP

Arabidopsis Description

Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8LA96]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.