CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG32246

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60860.1	KXG32246	AT3G06540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d009572_P001	Maize	cytosol, mitochondrion, plasma membrane	97.69	97.69
Os05t0564400-02	Rice	plasma membrane	97.22	96.77
Zm00001d039016_P001	Maize	cytosol, mitochondrion, plasma membrane	96.76	96.76
TraesCS1A01G398400.1	Wheat	cytosol	95.83	95.83
TraesCS1B01G426300.1	Wheat	cytosol	95.37	95.37
TraesCS1D01G405900.1	Wheat	cytosol	95.37	95.37
OQU89311	Sorghum	cytosol	93.52	93.52
VIT_10s0003g00550.t01	Wine grape	cytosol	91.67	91.24
AT5G60860.1	Thale cress	cytosol	91.2	90.78
PGSC0003DMT400024319	Potato	cytosol	90.74	90.32
Solyc07g053480.2.1	Tomato	cytosol, plastid	90.74	90.32
KRH20359	Soybean	cytosol, endoplasmic reticulum	90.28	89.86
VIT_19s0014g01820.t01	Wine grape	cytosol	89.81	89.4
KRH25681	Soybean	cytosol	89.81	89.4
KRH55839	Soybean	endoplasmic reticulum	89.81	89.4
KRH50137	Soybean	cytosol, mitochondrion	88.89	88.48
PGSC0003DMT400020208	Potato	cytosol	88.43	88.02
AT3G15060.1	Thale cress	cytosol	88.43	88.02
Solyc12g010790.1.1	Tomato	cytosol, nucleus, unclear	87.96	87.56
Bra001581.1-P	Field mustard	cytosol	87.96	87.16
KRH30863	Soybean	cytosol	87.5	87.1
CDX82451	Canola	cytosol	87.5	86.7
KRH32712	Soybean	cytosol, endoplasmic reticulum, mitochondrion	86.57	86.18
CDY30818	Canola	cytosol	86.57	85.78
CDY34094	Canola	cytosol	86.57	85.78
CDX75804	Canola	cytosol	86.57	85.78
Bra032914.1-P	Field mustard	cytosol	86.57	85.78
Solyc12g014080.1.1	Tomato	cytosol	85.65	85.25
CDX90160	Canola	cytosol	84.72	85.12
Bra010860.1-P	Field mustard	cytosol	84.72	85.12
CDY35757	Canola	cytosol	85.65	84.86
CDX94631	Canola	cytosol	85.65	84.86
Bra030105.1-P	Field mustard	cytosol	85.65	84.86
PGSC0003DMT400039780	Potato	cytosol, mitochondrion	85.19	84.79
AT1G28550.1	Thale cress	cytosol	85.19	84.4
CDY15659	Canola	cytosol	85.19	84.4
PGSC0003DMT400033395	Potato	cytosol	84.26	84.26
CDY20100	Canola	cytosol	84.72	83.94
Bra021589.1-P	Field mustard	cytosol	84.72	83.94
Solyc03g006270.2.1	Tomato	cytosol	83.8	83.8
PGSC0003DMT400058784	Potato	cytosol	83.33	83.72
AT2G33870.1	Thale cress	cytosol	84.26	83.49
VIT_12s0028g02650.t01	Wine grape	cytosol	83.33	83.33
Solyc10g008840.2.1	Tomato	cytosol	82.87	83.26
CDX79548	Canola	cytosol	75.46	82.74
Bra022959.1-P	Field mustard	cytosol	83.33	82.57
AT4G18430.1	Thale cress	cytosol	81.94	81.57
CDY01540	Canola	cytosol	81.48	81.11
CDY55638	Canola	cytosol	81.48	81.11
Bra012597.1-P	Field mustard	cytosol	81.02	80.65
GSMUA_Achr7P14790_001	Banana	cytosol	71.3	80.21
CDX76522	Canola	cytosol	80.56	80.18
Bra021009.1-P	Field mustard	cytosol	80.09	79.72
EER89913	Sorghum	cytosol	79.63	79.26
KRH27001	Soybean	cytosol, endoplasmic reticulum	78.7	77.98
KRH22324	Soybean	cytosol, endoplasmic reticulum	78.24	77.52
OQU87300	Sorghum	cytosol	76.39	75.34
EES19812	Sorghum	cytosol	74.07	72.73
CDY60884	Canola	cytosol	74.54	72.2
KXG37238	Sorghum	cytosol	66.67	66.98
OQU77196	Sorghum	cytosol	66.67	65.45
EER98344	Sorghum	cytosol	67.13	65.02
EES17935	Sorghum	cytosol	62.96	62.67
EER90540	Sorghum	cytosol	65.28	59.75
EER96479	Sorghum	cytosol	62.5	59.73
EER92725	Sorghum	cytosol	59.72	59.45
OQU91938	Sorghum	cytosol	59.26	58.99
GSMUA_Achr7P10970_001	Banana	cytosol	66.2	56.52
EER90389	Sorghum	cytosol	44.91	46.41
EER97073	Sorghum	cytosol	53.24	44.92

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	EntrezGene:8063601	UniProt:C5YVK5	EnsemblPlants:EES19950	ProteinID:EES19950
ProteinID:EES19950.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768
GO:GO:0016787	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF346	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SMART:SM00177
EnsemblPlantsGene:SORBI_3009G232900	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0001A892C6
RefSeq:XP_002441520.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:57257074..57258739

Molecular Weight (calculated)

24028.4 Da

IEP (calculated)

5.391

GRAVY (calculated)

-0.267

Length

216 amino acids

Sequence
(BLAST)

001: MAYRADDDYD YLFKVVLIGD SGVGKSNLLS RFTRNEFSLE SKSTIGVEFA TRSIHVDDKV VKAQIWDTAG QERYRAITSA YYRGAVGALV VYDVTRHVTF
101: ENVERWMREL KDHTDANIVI MLVGNKADLR HLRAVPTEDA KAFAERENAF FMETSALEAM NVEDAFTEVL TQIYRVVSKK ALDIGDDPAA PPKGQTINVG
201: GKDDVSAVKK SACCSS

Best Arabidopsis Sequence Match ( AT5G60860.1 )
(BLAST)

001: MAAYRADDEY DYLFKVVLIG DSGVGKSNLL SRFTRNEFSL ESKSTIGVEF ATRSIHVDDK IVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHVT
101: FENVERWLKE LRDHTDANIV IMFVGNKADL RHLRAVSTED AKAFAERENT FFMETSALES MNVENAFTEV LSQIYRVVSR KALDIGDDPA ALPKGQTINV
201: GSKDDVSAVK KVGCCSN

Arabidopsis Description

RABA1FRas-related protein RABA1f [Source:UniProtKB/Swiss-Prot;Acc:Q9FJH0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.