Factsheet for Os05t0564400-02

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
vacuole 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 18260611
plasma membrane: 27800704
plasma membrane: 28056797

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0269100-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60860.1	Os01t0269100-01	AT3G06540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES19950	Sorghum	cytosol	96.77	97.22
Zm00001d009572_P001	Maize	cytosol, mitochondrion, plasma membrane	95.85	96.3
Os09t0327100-01	Rice	plasma membrane	93.55	93.98
Zm00001d039016_P001	Maize	cytosol, mitochondrion, plasma membrane	93.55	93.98
TraesCS1A01G398400.1	Wheat	cytosol	93.55	93.98
TraesCS1D01G405900.1	Wheat	cytosol	93.09	93.52
TraesCS1B01G426300.1	Wheat	cytosol	93.09	93.52
PGSC0003DMT400024319	Potato	cytosol	92.17	92.17
Solyc07g053480.2.1	Tomato	cytosol, plastid	92.17	92.17
AT5G60860.1	Thale cress	cytosol	91.71	91.71
KRH20359	Soybean	cytosol, endoplasmic reticulum	91.71	91.71
VIT_10s0003g00550.t01	Wine grape	cytosol	91.71	91.71
VIT_19s0014g01820.t01	Wine grape	cytosol	90.78	90.78
KRH50137	Soybean	cytosol, mitochondrion	90.32	90.32
KRH25681	Soybean	cytosol	90.32	90.32
KRH55839	Soybean	endoplasmic reticulum	89.86	89.86
PGSC0003DMT400020208	Potato	cytosol	89.4	89.4
KRH30863	Soybean	cytosol	88.94	88.94
Solyc12g010790.1.1	Tomato	cytosol, nucleus, unclear	88.94	88.94
AT3G15060.1	Thale cress	cytosol	88.02	88.02
KRH32712	Soybean	cytosol, endoplasmic reticulum, mitochondrion	87.56	87.56
Bra001581.1-P	Field mustard	cytosol	86.64	86.24
Solyc12g014080.1.1	Tomato	cytosol	86.18	86.18
VIT_12s0028g02650.t01	Wine grape	cytosol	85.71	86.11
CDY30818	Canola	cytosol	86.18	85.78
CDY34094	Canola	cytosol	86.18	85.78
Bra032914.1-P	Field mustard	cytosol	86.18	85.78
CDX82451	Canola	cytosol	86.18	85.78
PGSC0003DMT400039780	Potato	cytosol, mitochondrion	85.71	85.71
CDX90160	Canola	cytosol	84.33	85.12
Bra010860.1-P	Field mustard	cytosol	84.33	85.12
Bra030105.1-P	Field mustard	cytosol	85.25	84.86
CDY35757	Canola	cytosol	85.25	84.86
CDX75804	Canola	cytosol	85.25	84.86
CDX94631	Canola	cytosol	85.25	84.86
CDY15659	Canola	cytosol	84.79	84.4
AT1G28550.1	Thale cress	cytosol	84.79	84.4
AT2G33870.1	Thale cress	cytosol	83.87	83.49
PGSC0003DMT400033395	Potato	cytosol	82.95	83.33
CDY20100	Canola	cytosol	83.41	83.03
Bra021589.1-P	Field mustard	cytosol	83.41	83.03
Solyc03g006270.2.1	Tomato	cytosol	82.49	82.87
PGSC0003DMT400058784	Potato	cytosol	82.03	82.79
Solyc10g008840.2.1	Tomato	cytosol	81.57	82.33
CDX79548	Canola	cytosol	74.19	81.73
Bra022959.1-P	Field mustard	cytosol	81.57	81.19
GSMUA_Achr7P14790_001	Banana	cytosol	71.43	80.73
KRH27001	Soybean	cytosol, endoplasmic reticulum	80.18	79.82
AT4G18430.1	Thale cress	cytosol	79.72	79.72
KRH22324	Soybean	cytosol, endoplasmic reticulum	79.72	79.36
CDY01540	Canola	cytosol	79.26	79.26
CDY55638	Canola	cytosol	79.26	79.26
Os06t0551400-01	Rice	cytosol, golgi, plasma membrane, plastid	78.8	78.8
Bra012597.1-P	Field mustard	cytosol	78.8	78.8
CDX76522	Canola	cytosol	78.34	78.34
TraesCS3A01G247000.1	Wheat	cytosol	78.34	77.98
TraesCS3D01G244500.1	Wheat	cytosol	78.34	77.98
Bra021009.1-P	Field mustard	cytosol	77.88	77.88
Zm00001d043935_P001	Maize	cytosol	77.42	76.36
OQU87300	Sorghum	cytosol	76.04	75.34
CDY60884	Canola	cytosol	72.81	70.85
Os01t0848700-01	Rice	cytosol, plasma membrane	65.44	65.74
Os03t0823700-01	Rice	plasma membrane	64.98	65.58
Os03t0843100-01	Rice	cytosol	66.82	65.02
Os05t0105100-01	Rice	golgi, plasma membrane	64.98	64.09
Os10t0377400-01	Rice	cytosol	59.45	59.72
GSMUA_Achr7P10970_001	Banana	cytosol	67.74	58.1
Os06t0714600-01	Rice	cytosol	51.61	49.78
Os09t0527600-01	Rice	cytosol, plasma membrane	54.38	49.37
TraesCS3B01G272300.1	Wheat	cytosol	78.34	49.13

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	EntrezGene:4339623	ProteinID:AAT77401.1	EMBL:AK073075	EMBL:AK109344
ProteinID:BAF18247.1	ProteinID:BAS95355.1	ProteinID:EEE64702.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005768	GO:GO:0016787	EnsemblPlantsGene:Os05g0564400	EnsemblPlants:Os05t0564400-02	InterPro:P-loop_NTPase
PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF346	UniProt:Q6AUF8
SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI00003FE69E	RefSeq:XP_015639848.1	SEG:seg	:

Description

small GTP-binding protein OsRab11C3Similar to GTP-binding protein. (Os05t0564400-02)

Coordinates

chr5:-:28092844..28094569

Molecular Weight (calculated)

24087.4 Da

IEP (calculated)

5.680

GRAVY (calculated)

-0.269

Length

217 amino acids

Sequence
(BLAST)

001: MAYRADDDYD YLFKVVLIGD SGVGKSNLLS RFTRNEFSLE SKSTIGVEFA TRSIHVDDKV VKAQIWDTAG QERYRAITSA YYRGAVGALV VYDVTRHVTF
101: ENVERWMREL KDHTDANIVI MLVGNKADLR HLRAVSTEDA KAFAEKENTF FMETSALESM NVENAFTEVL TQIYHVVSKK ALDIGDDPAA PPKGQTINVG
201: GKDDVSAVKK SACCSSA

Best Arabidopsis Sequence Match ( AT5G60860.1 )
(BLAST)

001: MAAYRADDEY DYLFKVVLIG DSGVGKSNLL SRFTRNEFSL ESKSTIGVEF ATRSIHVDDK IVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHVT
101: FENVERWLKE LRDHTDANIV IMFVGNKADL RHLRAVSTED AKAFAERENT FFMETSALES MNVENAFTEV LSQIYRVVSR KALDIGDDPA ALPKGQTINV
201: GSKDDVSAVK KVGCCSN

Arabidopsis Description

RABA1FRas-related protein RABA1f [Source:UniProtKB/Swiss-Prot;Acc:Q9FJH0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.