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Maize
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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plasma membrane, cytosol

Predictor Summary:
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, mitochondrion, plasma membrane
Any Predictor:cytosol, mitochondrion
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 mitochondrion: 27297264
plasma membrane: 27341663
msms PMID: 27297264 doi
D Dahal, KJ Newton, BP Mooney
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID: 27341663 doi
P Voothuluru, JC Anderson, RE Sharp, SC Peck
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
PPI

Inferred distinct locusB in Crop

locusBlocations
Zm00001d004622_P001
Zm00001d008269_P001
Zm00001d009201_P001
Zm00001d040408_P003
Zm00001d050984_P001

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G60860.1 Zm00001d004622_P001 AT3G06540.1 21798944
AT5G60860.1 Zm00001d008269_P001 AT3G06540.1 21798944
AT5G60860.1 Zm00001d009201_P001 AT3G06540.1 21798944
AT5G60860.1 Zm00001d040408_P003 AT3G06540.1 21798944
AT5G60860.1 Zm00001d050984_P001 AT3G06540.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EES19950 Sorghum cytosol 97.69 97.69
Zm00001d039016_P001 Maize cytosol, mitochondrion, plasma membrane 96.3 96.3
Os05t0564400-02 Rice plasma membrane 96.3 95.85
TraesCS1A01G398400.1 Wheat cytosol 93.52 93.52
TraesCS1D01G405900.1 Wheat cytosol 93.06 93.06
TraesCS1B01G426300.1 Wheat cytosol 93.06 93.06
VIT_10s0003g00550.t01 Wine grape cytosol 90.74 90.32
AT5G60860.1 Thale cress cytosol 90.28 89.86
KRH20359 Soybean cytosol, endoplasmic reticulum 90.28 89.86
PGSC0003DMT400024319 Potato cytosol 89.81 89.4
Solyc07g053480.2.1 Tomato cytosol, plastid 89.81 89.4
VIT_19s0014g01820.t01 Wine grape cytosol 89.35 88.94
KRH50137 Soybean cytosol, mitochondrion 88.89 88.48
KRH25681 Soybean cytosol 88.89 88.48
KRH55839 Soybean endoplasmic reticulum 88.89 88.48
KRH30863 Soybean cytosol 87.5 87.1
AT3G15060.1 Thale cress cytosol 87.5 87.1
PGSC0003DMT400020208 Potato cytosol 87.5 87.1
Solyc12g010790.1.1 Tomato cytosol, nucleus, unclear 87.04 86.64
KRH32712 Soybean cytosol, endoplasmic reticulum, mitochondrion 86.57 86.18
Bra001581.1-P Field mustard cytosol 86.57 85.78
CDX82451 Canola cytosol 86.11 85.32
CDY30818 Canola cytosol 85.65 84.86
CDY34094 Canola cytosol 85.65 84.86
Bra032914.1-P Field mustard cytosol 85.65 84.86
CDX75804 Canola cytosol 85.19 84.4
Solyc12g014080.1.1 Tomato cytosol 84.72 84.33
PGSC0003DMT400033395 Potato cytosol 84.26 84.26
Bra010860.1-P Field mustard cytosol 83.8 84.19
CDX90160 Canola cytosol 83.8 84.19
CDY35757 Canola cytosol 84.72 83.94
Bra030105.1-P Field mustard cytosol 84.72 83.94
CDX94631 Canola cytosol 84.72 83.94
PGSC0003DMT400039780 Potato cytosol, mitochondrion 84.26 83.87
Solyc03g006270.2.1 Tomato cytosol 83.8 83.8
PGSC0003DMT400058784 Potato cytosol 83.33 83.72
CDY15659 Canola cytosol 84.26 83.49
AT1G28550.1 Thale cress cytosol 84.26 83.49
VIT_12s0028g02650.t01 Wine grape cytosol 83.33 83.33
Solyc10g008840.2.1 Tomato cytosol 82.87 83.26
AT2G33870.1 Thale cress cytosol 83.33 82.57
CDY20100 Canola cytosol 83.33 82.57
Bra021589.1-P Field mustard cytosol 83.33 82.57
CDX79548 Canola cytosol 74.54 81.73
Bra022959.1-P Field mustard cytosol 82.41 81.65
AT4G18430.1 Thale cress cytosol 81.48 81.11
CDY55638 Canola cytosol 81.02 80.65
CDY01540 Canola cytosol 81.02 80.65
Bra012597.1-P Field mustard cytosol 80.56 80.18
CDX76522 Canola cytosol 80.09 79.72
Bra021009.1-P Field mustard cytosol 79.63 79.26
GSMUA_Achr7P14790_001 Banana cytosol 70.37 79.17
KRH27001 Soybean cytosol, endoplasmic reticulum 78.7 77.98
Zm00001d046313_P001 Maize plastid 78.24 77.88
KRH22324 Soybean cytosol, endoplasmic reticulum 78.24 77.52
Zm00001d043935_P001 Maize cytosol 78.24 76.82
CDY60884 Canola cytosol 74.07 71.75
Zm00001d034675_P002 Maize cytosol 67.13 67.44
Zm00001d005495_P001 Maize extracellular, mitochondrion, plasma membrane 65.74 63.68
Zm00001d034802_P001 Maize cytosol 66.67 61.54
Zm00001d034803_P001 Maize cytosol 66.2 61.11
Zm00001d048222_P001 Maize extracellular, plasma membrane 60.19 59.91
Zm00001d014278_P001 Maize extracellular, plasma membrane 59.72 59.45
Zm00001d028002_P001 Maize mitochondrion 59.72 59.45
Zm00001d005504_P001 Maize cytosol, extracellular 62.04 59.29
Zm00001d037004_P002 Maize cytosol 78.7 59.23
GSMUA_Achr7P10970_001 Banana cytosol 66.67 56.92
Zm00001d021246_P002 Maize cytosol 51.39 44.76
Protein Annotations
EntrezGene:100272710MapMan:22.8.1.1Gene3D:3.40.50.300ProteinID:AQK92171.1UniProt:B4FQ28EMBL:BT039216
GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0003924GO:GO:0005488GO:GO:0005525
GO:GO:0016787InterPro:P-loop_NTPasePFAM:PF00071PRINTS:PR00449PFscan:PS51419PANTHER:PTHR24073
PANTHER:PTHR24073:SF346SMART:SM00173SMART:SM00174SMART:SM00175SMART:SM00176SUPFAM:SSF52540
InterPro:Small_GTP-bd_domInterPro:Small_GTPaseTIGRFAMs:TIGR00231UniParc:UPI00017B78B0EnsemblPlantsGene:Zm00001d009572EnsemblPlants:Zm00001d009572_P001
EnsemblPlants:Zm00001d009572_T001:::::
Description
Ras-related protein RABA1f
Coordinates
chr8:-:71293573..71295391
Molecular Weight (calculated)
23980.3 Da
IEP (calculated)
5.680
GRAVY (calculated)
-0.240
Length
216 amino acids
Sequence
(BLAST)
001: MAYRADDDYD YLFKVVLIGD SGVGKSNLLS RFTRNEFSLE SKSTIGVEFA TRSIHVDDKV VKAQIWDTAG QERYRAITSA YYRGAVGALV VYDVTRHVTF
101: ENVERWMREL RDHTDANIVI MLVGNKADLR HLRAVPTEDA KAFAERENAF FMETSALEAM NVEGAFTEVL TQIYHVVSKK ALDIGDDPAA PPRGQTISVG
201: GKDDVSAVKK SACCSS
Best Arabidopsis Sequence Match ( AT5G60860.1 )
(BLAST)
001: MAAYRADDEY DYLFKVVLIG DSGVGKSNLL SRFTRNEFSL ESKSTIGVEF ATRSIHVDDK IVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHVT
101: FENVERWLKE LRDHTDANIV IMFVGNKADL RHLRAVSTED AKAFAERENT FFMETSALES MNVENAFTEV LSQIYRVVSR KALDIGDDPA ALPKGQTINV
201: GSKDDVSAVK KVGCCSN
Arabidopsis Description
RABA1FRas-related protein RABA1f [Source:UniProtKB/Swiss-Prot;Acc:Q9FJH0]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.