Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
20408568
plasma membrane: 27341663 |
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU91938 | Sorghum | cytosol | 97.7 | 97.7 |
| Os10t0377400-01 | Rice | cytosol | 96.31 | 96.76 |
| TraesCS1D01G136900.1 | Wheat | cytosol | 94.47 | 94.91 |
| TraesCS1B01G152100.1 | Wheat | cytosol | 94.47 | 94.91 |
| TraesCS1A01G131500.2 | Wheat | cytosol | 94.47 | 94.91 |
| Zm00001d048222_P001 | Maize | extracellular, plasma membrane | 91.24 | 91.24 |
| Zm00001d028002_P001 | Maize | mitochondrion | 90.78 | 90.78 |
| GSMUA_Achr8P18090_001 | Banana | cytosol | 85.25 | 84.86 |
| GSMUA_Achr3P01690_001 | Banana | cytosol | 84.79 | 84.02 |
| GSMUA_Achr3P21290_001 | Banana | cytosol | 83.87 | 83.11 |
| Solyc11g010100.1.1 | Tomato | cytosol | 84.33 | 81.7 |
| PGSC0003DMT400041813 | Potato | cytosol | 84.33 | 81.7 |
| KRH31313 | Soybean | endoplasmic reticulum | 83.87 | 81.61 |
| KRG97554 | Soybean | cytosol, endoplasmic reticulum | 82.95 | 80.72 |
| VIT_07s0191g00030.t01 | Wine grape | cytosol | 83.41 | 80.09 |
| Solyc04g012180.2.1 | Tomato | cytosol, unclear | 80.65 | 78.83 |
| PGSC0003DMT400060649 | Potato | cytosol | 80.65 | 78.83 |
| CDX69843 | Canola | cytosol | 79.26 | 77.13 |
| AT5G65270.1 | Thale cress | cytosol | 80.18 | 76.99 |
| CDX96994 | Canola | cytosol | 78.8 | 76.68 |
| Bra009040.1-P | Field mustard | cytosol | 78.8 | 76.68 |
| Bra037810.1-P | Field mustard | cytosol | 79.26 | 76.44 |
| CDY18682 | Canola | cytosol | 79.26 | 76.44 |
| KRH59301 | Soybean | cytosol, endoplasmic reticulum | 80.18 | 75.98 |
| Bra011818.1-P | Field mustard | cytosol | 77.88 | 75.78 |
| CDY69836 | Canola | cytosol | 77.88 | 75.45 |
| CDX81274 | Canola | cytosol | 78.8 | 75.33 |
| AT4G39990.1 | Thale cress | cytosol | 76.04 | 73.66 |
| HORVU1Hr1G034400.4 | Barley | plasma membrane | 92.63 | 73.63 |
| Zm00001d005504_P001 | Maize | cytosol, extracellular | 74.19 | 71.24 |
| KRH43151 | Soybean | cytosol, endoplasmic reticulum | 76.96 | 70.46 |
| Zm00001d034675_P002 | Maize | cytosol | 63.13 | 63.72 |
| CDX69367 | Canola | cytosol | 51.61 | 60.87 |
| Zm00001d009572_P001 | Maize | cytosol, mitochondrion, plasma membrane | 59.45 | 59.72 |
| Zm00001d046313_P001 | Maize | plastid | 59.45 | 59.45 |
| Zm00001d039016_P001 | Maize | cytosol, mitochondrion, plasma membrane | 58.53 | 58.8 |
| Zm00001d005495_P001 | Maize | extracellular, mitochondrion, plasma membrane | 59.45 | 57.85 |
| Zm00001d043935_P001 | Maize | cytosol | 56.68 | 55.91 |
| Zm00001d034802_P001 | Maize | cytosol | 56.22 | 52.14 |
| Zm00001d034803_P001 | Maize | cytosol | 55.3 | 51.28 |
| Zm00001d021246_P002 | Maize | cytosol | 55.76 | 48.79 |
| Zm00001d037004_P002 | Maize | cytosol | 60.37 | 45.64 |
| CDX69369 | Canola | cytosol | 76.5 | 40.69 |
Protein Annotations
| EntrezGene:100283230 | MapMan:22.8.1.1 | Gene3D:3.40.50.300 | ProteinID:AQK65729.1 | UniProt:B6TG03 | EMBL:BT068335 |
| EMBL:EU963918 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 |
| GO:GO:0005525 | GO:GO:0016787 | InterPro:P-loop_NTPase | PFAM:PF00071 | PRINTS:PR00449 | PFscan:PS51419 |
| PANTHER:PTHR24073 | PANTHER:PTHR24073:SF647 | SMART:SM00173 | SMART:SM00174 | SMART:SM00175 | SMART:SM00176 |
| SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGRFAMs:TIGR00231 | UniParc:UPI000182D888 | EnsemblPlantsGene:Zm00001d014278 |
| EnsemblPlants:Zm00001d014278_P001 | EnsemblPlants:Zm00001d014278_T001 | : | : | : | : |
Description
Ras-related protein RABA4a
Coordinates
chr5:+:39066404..39076918
Molecular Weight (calculated)
23912.6 Da
IEP (calculated)
8.210
GRAVY (calculated)
-0.246
Length
217 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGGGDKVDY VFKVVLIGDS AVGKSQILAR FARNEFSLDS KATIGVEFQT RTLVIEHKSV KAQIWDTAGQ ERYRAVTSAY YRGALGALLV YDITKRQSFD
101: HIPRWLEELR GHADKNIVIM LVGNKSDLED ERAVSTEDAK EFAEKENLFF LETSALQATN VENAFQTVLT EIFKIHSKKN MAADPRANGA APSLAGKKVI
201: VPGPAQEIPK SKCCSSM
101: HIPRWLEELR GHADKNIVIM LVGNKSDLED ERAVSTEDAK EFAEKENLFF LETSALQATN VENAFQTVLT EIFKIHSKKN MAADPRANGA APSLAGKKVI
201: VPGPAQEIPK SKCCSSM
001: MTSGGGYGDP SQKIDYVFKV VLIGDSAVGK SQILARYARD EFSLDSKATI GVEFQTRTLV IDHKSVKAQI WDTAGQERYR AVTSAYYRGA VGAMLVYDIT
101: RRQTFDHIPR WLEELRAHAD KNIVIILIGN KSDLVDQRAI PTEDAKEFAE KEGLFFLETS AFNATNVESA FSTVLTEIFN IVNKKSLAAS EDQENGNPGS
201: LAGKKIDIVP GPGQVIPNKS NMCCNS
101: RRQTFDHIPR WLEELRAHAD KNIVIILIGN KSDLVDQRAI PTEDAKEFAE KEGLFFLETS AFNATNVESA FSTVLTEIFN IVNKKSLAAS EDQENGNPGS
201: LAGKKIDIVP GPGQVIPNKS NMCCNS
Arabidopsis Description
RABA4ARABA4a [Source:UniProtKB/TrEMBL;Acc:A0A178UKD0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.