Factsheet for VIT_07s0191g00030.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400041813	Potato	cytosol	90.27	91.07
Solyc11g010100.1.1	Tomato	cytosol	90.27	91.07
KRH31313	Soybean	endoplasmic reticulum	88.94	90.13
PGSC0003DMT400060649	Potato	cytosol	87.61	89.19
Solyc04g012180.2.1	Tomato	cytosol, unclear	87.61	89.19
KRG97554	Soybean	cytosol, endoplasmic reticulum	86.73	87.89
GSMUA_Achr8P18090_001	Banana	cytosol	80.97	83.94
GSMUA_Achr3P01690_001	Banana	cytosol	80.97	83.56
GSMUA_Achr3P21290_001	Banana	cytosol	80.97	83.56
Zm00001d014278_P001	Maize	extracellular, plasma membrane	80.09	83.41
OQU91938	Sorghum	cytosol	79.65	82.95
Os10t0377400-01	Rice	cytosol	78.76	82.41
TraesCS1D01G136900.1	Wheat	cytosol	78.32	81.94
TraesCS1A01G131500.2	Wheat	cytosol	78.32	81.94
TraesCS1B01G152100.1	Wheat	cytosol	78.32	81.94
Zm00001d048222_P001	Maize	extracellular, plasma membrane	76.99	80.18
EER92725	Sorghum	cytosol	76.99	80.18
Zm00001d028002_P001	Maize	mitochondrion	76.55	79.72
VIT_13s0064g01300.t01	Wine grape	cytosol	76.11	76.11
VIT_08s0007g07800.t01	Wine grape	cytosol	72.57	73.54
CDX69367	Canola	cytosol	53.98	66.3
HORVU1Hr1G034400.4	Barley	plasma membrane	76.99	63.74
VIT_12s0035g01140.t01	Wine grape	extracellular	58.85	61.86
VIT_06s0004g05550.t01	Wine grape	cytosol, extracellular	59.29	61.75
VIT_10s0003g00550.t01	Wine grape	cytosol	57.08	59.45
VIT_12s0028g02650.t01	Wine grape	cytosol	56.19	58.8
VIT_15s0048g03000.t01	Wine grape	cytosol	61.95	58.58
VIT_19s0014g01820.t01	Wine grape	cytosol	56.19	58.53
VIT_13s0019g02470.t01	Wine grape	cytosol	59.29	55.6
VIT_19s0014g01160.t01	Wine grape	extracellular	56.64	50.79

Protein Annotations

EntrezGene:100262838	wikigene:100262838	MapMan:22.8.1.1	Gene3D:3.40.50.300	UniProt:A5BGY6	EMBL:AM459225
ProteinID:CAN70163	ProteinID:CAN70163.1	ProteinID:CCB57345	ProteinID:CCB57345.1	EMBL:FN596027	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005794	GO:GO:0016787
EntrezGene:LOC100262838	wikigene:LOC100262838	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF647	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGR:TC52557	TIGRFAMs:TIGR00231
UniParc:UPI0001520BC0	ArrayExpress:VIT_07s0191g00030	EnsemblPlantsGene:VIT_07s0191g00030	EnsemblPlants:VIT_07s0191g00030.t01	unigene:Vvi.8974	RefSeq:XP_002273530
RefSeq:XP_002273530.1	:	:	:	:	:

Description

No Description!

Coordinates

chr7:+:14787923..14790659

Molecular Weight (calculated)

24849.6 Da

IEP (calculated)

6.795

GRAVY (calculated)

-0.249

Length

226 amino acids

Sequence
(BLAST)

001: MASGGGYGDS SQKIDYVFKV VLIGDSAVGK SQILARFARN EFSLDSKATI GVEFQTRTLV IQHKSVKAQI WDTAGQERYR AVTSAYYRGA VGAMLVYDIT
101: KRQSFDHIPR WLEELRGHAD KNIVIILIGN KTDLEEQRAV PTEDAKEFAE KEGLFFLETS ALEATNVENA FLTVLTEIFN IVNKKNLVAG EDQANGNPAS
201: LTGKRITIPG PAQEIPAKSN MCCKSS

Best Arabidopsis Sequence Match ( AT5G65270.1 )
(BLAST)

001: MTSGGGYGDP SQKIDYVFKV VLIGDSAVGK SQILARYARD EFSLDSKATI GVEFQTRTLV IDHKSVKAQI WDTAGQERYR AVTSAYYRGA VGAMLVYDIT
101: RRQTFDHIPR WLEELRAHAD KNIVIILIGN KSDLVDQRAI PTEDAKEFAE KEGLFFLETS AFNATNVESA FSTVLTEIFN IVNKKSLAAS EDQENGNPGS
201: LAGKKIDIVP GPGQVIPNKS NMCCNS

Arabidopsis Description

RABA4ARABA4a [Source:UniProtKB/TrEMBL;Acc:A0A178UKD0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.