Subcellular Localization
min:
: max
Winner_takes_all: extracellular, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- vacuole 1
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| extracellular:
27664331
|
msms PMID:
27664331
doi
Departament de Biologia Vegetal, Facultat de Farmàcia, Universitat de València, Burjassot, Valencia, Spain., Grupo de Ciencias de la Alimentación Basada en la Evidencia y Experimentación (CiAlBEx), Instituto de Ciencias de los Materiales, Parque Científico, Universitat de València, Paterna, Spain; Unidad Mixta de Investigación en Endocrinología, Nutrición y Dietética Clínica, Instituto de Investigación Sanitaria La Fe-Universitat de València, Valencia, Spain., Unidad Mixta de Investigación en Endocrinología, Nutrición y Dietética Clínica, Instituto de Investigación Sanitaria La Fe-Universitat de València, Valencia, Spain; Àrea de Parasitologia, Departament de Farmàcia i Tecnologia Farmacèutica i Parasitologia, Universitat de València, Burjassot, Valencia, Spain. Electronic address: antonio.marcilla@uv.es.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH29738 | Soybean | endoplasmic reticulum | 92.17 | 92.59 |
| KRH24729 | Soybean | endoplasmic reticulum, nucleus | 91.71 | 92.13 |
| PGSC0003DMT400053686 | Potato | cytosol | 89.4 | 89.81 |
| Solyc06g005810.2.1 | Tomato | cytosol, unclear | 89.4 | 89.81 |
| PGSC0003DMT400078200 | Potato | cytosol | 87.56 | 88.37 |
| Solyc06g076450.2.1 | Tomato | plastid | 87.1 | 87.91 |
| Bra018190.1-P | Field mustard | cytosol | 87.56 | 87.56 |
| AT1G07410.1 | Thale cress | cytosol | 86.18 | 87.38 |
| AT5G59150.1 | Thale cress | cytosol | 87.1 | 87.1 |
| AT3G46830.1 | Thale cress | cytosol | 87.1 | 87.1 |
| CDY33014 | Canola | cytosol | 86.64 | 86.64 |
| Bra002589.1-P | Field mustard | cytosol | 86.18 | 86.18 |
| CDY06703 | Canola | cytosol | 85.71 | 86.11 |
| Bra015578.1-P | Field mustard | cytosol | 85.25 | 85.65 |
| CDY06256 | Canola | cytosol | 84.33 | 85.51 |
| CDY09919 | Canola | cytosol | 84.33 | 85.51 |
| Bra020334.1-P | Field mustard | cytosol | 84.79 | 84.79 |
| CDY02867 | Canola | cytosol | 84.79 | 84.79 |
| CDY32661 | Canola | cytosol | 84.79 | 84.79 |
| CDY71720 | Canola | cytosol | 84.33 | 84.33 |
| VIT_13s0019g02470.t01 | Wine grape | cytosol | 85.71 | 77.18 |
| VIT_12s0035g01140.t01 | Wine grape | extracellular | 76.04 | 76.74 |
| CDX86101 | Canola | cytosol | 87.56 | 74.22 |
| CDX80299 | Canola | cytosol | 87.1 | 73.26 |
| Bra031573.1-P | Field mustard | cytosol | 82.95 | 70.31 |
| VIT_10s0003g00550.t01 | Wine grape | cytosol | 70.05 | 70.05 |
| VIT_19s0014g01820.t01 | Wine grape | cytosol | 69.12 | 69.12 |
| VIT_12s0028g02650.t01 | Wine grape | cytosol | 68.2 | 68.52 |
| CDX99094 | Canola | cytosol | 87.56 | 66.2 |
| VIT_13s0064g01300.t01 | Wine grape | cytosol | 64.06 | 61.5 |
| VIT_08s0007g07800.t01 | Wine grape | cytosol | 62.21 | 60.54 |
| VIT_19s0014g01160.t01 | Wine grape | extracellular | 69.12 | 59.52 |
| VIT_07s0191g00030.t01 | Wine grape | cytosol | 61.75 | 59.29 |
| VIT_15s0048g03000.t01 | Wine grape | cytosol | 58.53 | 53.14 |
Protein Annotations
| EntrezGene:100253476 | wikigene:100253476 | MapMan:22.8.1.1 | Gene3D:3.40.50.300 | UniProt:A5AR55 | EMBL:AM432734 |
| ProteinID:CAN62732 | ProteinID:CAN62732.1 | ProteinID:CCB43533 | ProteinID:CCB43533.1 | EMBL:FN594951 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0016787 |
| EntrezGene:LOC100253476 | wikigene:LOC100253476 | InterPro:P-loop_NTPase | PFAM:PF00071 | PRINTS:PR00449 | PFscan:PS51419 |
| PANTHER:PTHR24073 | PANTHER:PTHR24073:SF495 | SMART:SM00173 | SMART:SM00174 | SMART:SM00175 | SMART:SM00176 |
| SMART:SM00177 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGR:TC67402 | TIGRFAMs:TIGR00231 |
| UniParc:UPI000151F228 | ArrayExpress:VIT_06s0004g05550 | EnsemblPlantsGene:VIT_06s0004g05550 | EnsemblPlants:VIT_06s0004g05550.t01 | unigene:Vvi.7342 | RefSeq:XP_002282136 |
| RefSeq:XP_002282136.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr6:-:6376448..6378752
Molecular Weight (calculated)
24106.5 Da
IEP (calculated)
6.517
GRAVY (calculated)
-0.332
Length
217 amino acids
Sequence
(BLAST)
(BLAST)
001: MANRVDHEYD YLFKIVLIGD SGVGKSNILS RFTRNEFCLE SKSTIGVEFA TRTLQIDGKT VKAQIWDTAG QERYRAITSA YYRGAVGALL VYDITKRQTF
101: DNVQRWLREL RDHADSNIVI MMAGNKCDLK HLRAVSEEDG QGLAEREELS FLETSALEAT NIEKAFQTIL TEIYHIISKK ALAAQEAAAS TALPGQGTTI
201: NVNDASGNQN KKTCCST
101: DNVQRWLREL RDHADSNIVI MMAGNKCDLK HLRAVSEEDG QGLAEREELS FLETSALEAT NIEKAFQTIL TEIYHIISKK ALAAQEAAAS TALPGQGTTI
201: NVNDASGNQN KKTCCST
001: MANRIDHEYD YLFKIVLIGD SGVGKSNILS RFTRNEFCLE SKSTIGVEFA TRTLQVEGKT VKAQIWDTAG QERYRAITSA YYRGAVGALL VYDITKRQTF
101: ENVLRWLREL RDHADSNIVI MMAGNKSDLN HLRSVADEDG RSLAEKEGLS FLETSALEAT NIEKAFQTIL SEIYHIISKK ALAAQEAAGN LPGQGTAINI
201: SDSSATNRKG CCST
101: ENVLRWLREL RDHADSNIVI MMAGNKSDLN HLRSVADEDG RSLAEKEGLS FLETSALEAT NIEKAFQTIL SEIYHIISKK ALAAQEAAGN LPGQGTAINI
201: SDSSATNRKG CCST
Arabidopsis Description
RABA2BRABA2b [Source:UniProtKB/TrEMBL;Acc:A0A178WHD5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.