Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY33014 | Canola | cytosol | 83.72 | 99.54 |
| Bra002589.1-P | Field mustard | cytosol | 83.33 | 99.08 |
| AT5G59150.1 | Thale cress | cytosol | 79.46 | 94.47 |
| CDY32661 | Canola | cytosol | 79.07 | 94.01 |
| CDY02867 | Canola | cytosol | 78.68 | 93.55 |
| KRH29738 | Soybean | endoplasmic reticulum | 74.03 | 88.43 |
| KRH24729 | Soybean | endoplasmic reticulum, nucleus | 74.03 | 88.43 |
| Solyc06g005810.2.1 | Tomato | cytosol, unclear | 73.26 | 87.5 |
| PGSC0003DMT400053686 | Potato | cytosol | 73.26 | 87.5 |
| VIT_06s0004g05550.t01 | Wine grape | cytosol, extracellular | 73.26 | 87.1 |
| CDY06703 | Canola | cytosol | 72.87 | 87.04 |
| CDY06256 | Canola | cytosol | 72.09 | 86.92 |
| CDY09919 | Canola | cytosol | 72.09 | 86.92 |
| Solyc06g076450.2.1 | Tomato | plastid | 71.32 | 85.58 |
| PGSC0003DMT400078200 | Potato | cytosol | 71.32 | 85.58 |
| CDY71720 | Canola | cytosol | 71.71 | 85.25 |
| CDX86101 | Canola | cytosol | 81.4 | 82.03 |
| CDY50888 | Canola | cytosol | 62.02 | 73.73 |
| CDX99094 | Canola | cytosol | 81.78 | 73.52 |
| CDX93495 | Canola | cytosol | 61.63 | 73.27 |
| CDY35128 | Canola | cytosol | 58.53 | 69.91 |
| CDY40023 | Canola | cytosol | 58.14 | 69.44 |
| CDX96799 | Canola | cytosol | 58.14 | 69.44 |
| CDX75804 | Canola | cytosol | 57.36 | 67.89 |
| CDX82451 | Canola | cytosol | 57.36 | 67.89 |
| CDX90160 | Canola | cytosol | 56.2 | 67.44 |
| CDX99430 | Canola | cytosol | 55.81 | 67.29 |
| CDY62557 | Canola | cytosol | 55.81 | 66.98 |
| CDY64916 | Canola | cytosol | 55.81 | 66.98 |
| CDY35757 | Canola | cytosol | 56.59 | 66.97 |
| CDY15659 | Canola | cytosol | 56.59 | 66.97 |
| CDX94631 | Canola | cytosol | 56.2 | 66.51 |
| CDY20100 | Canola | cytosol | 55.81 | 66.06 |
| CDY34094 | Canola | cytosol | 55.81 | 66.06 |
| CDY30818 | Canola | cytosol | 55.81 | 66.06 |
| CDY01540 | Canola | cytosol | 54.65 | 64.98 |
| CDY55638 | Canola | cytosol | 54.65 | 64.98 |
| CDX79548 | Canola | cytosol | 49.61 | 64.97 |
| CDX87774 | Canola | cytosol | 53.88 | 64.35 |
| CDX76522 | Canola | cytosol | 53.88 | 64.06 |
| CDY09976 | Canola | cytosol | 54.65 | 63.23 |
| CDY06210 | Canola | cytosol | 54.65 | 63.23 |
| CDX86332 | Canola | cytosol | 52.33 | 60.54 |
| CDX96994 | Canola | cytosol | 51.94 | 60.09 |
| CDY54519 | Canola | cytosol | 51.94 | 60.09 |
| CDX69843 | Canola | cytosol | 51.94 | 60.09 |
| CDY00758 | Canola | cytosol | 51.16 | 59.73 |
| CDX73833 | Canola | cytosol | 51.16 | 59.73 |
| CDY52622 | Canola | cytosol | 50.78 | 59.01 |
| CDY50568 | Canola | cytosol | 50.78 | 59.01 |
| CDY42133 | Canola | cytosol | 50.78 | 59.01 |
| CDY08447 | Canola | cytosol | 50.78 | 59.01 |
| CDY60884 | Canola | cytosol | 50.78 | 58.74 |
| CDY18682 | Canola | cytosol | 50.78 | 58.22 |
| CDY69836 | Canola | cytosol | 50.0 | 57.59 |
| CDX81274 | Canola | cytosol | 50.39 | 57.27 |
| CDX81790 | Canola | plastid | 58.53 | 56.55 |
| CDX90017 | Canola | cytosol | 43.8 | 47.68 |
| CDY15192 | Canola | cytosol | 43.8 | 47.68 |
| CDX69367 | Canola | cytosol | 33.72 | 47.28 |
| CDX69369 | Canola | cytosol | 49.61 | 31.37 |
Protein Annotations
| MapMan:22.8.1.1 | Gene3D:3.40.50.300 | GO:A0A078CW84 | EnsemblPlants:CDX80299 | ProteinID:CDX80299 | ProteinID:CDX80299.1 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005525 |
| GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00133307001 | InterPro:P-loop_NTPase | PFAM:PF00071 | PRINTS:PR00449 | PFscan:PS51419 |
| PANTHER:PTHR24073 | PANTHER:PTHR24073:SF495 | SMART:SM00173 | SMART:SM00174 | SMART:SM00175 | SMART:SM00176 |
| SMART:SM00177 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGRFAMs:TIGR00231 | UniParc:UPI0004EDB82F |
| SEG:seg | : | : | : | : | : |
Description
BnaC09g34430D
Coordinates
chrLK031820:+:1400833..1404316
Molecular Weight (calculated)
28446.7 Da
IEP (calculated)
7.966
GRAVY (calculated)
-0.313
Length
258 amino acids
Sequence
(BLAST)
(BLAST)
001: MCDFLKHGFN GSIPKNSLFP SIESRSEEGS LLFVRSKRKK KMAHRVEQDY DYLFKIVLIG DSGVGKSNIL SRFTRNEFCL ESKSTIGVEF ATRTLQVEGK
101: TVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDITKRQT FDNALRWLRE LRDHADSNIV IMMAGNKSDL NHLRSVSEED GRNLAEAEGL SFLETSALEA
201: TNVEKAFQTV LTEIYHIISK KALAAQEAAA ANSAIPGQGT TINVDDTSGA AKSGCCSS
101: TVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDITKRQT FDNALRWLRE LRDHADSNIV IMMAGNKSDL NHLRSVSEED GRNLAEAEGL SFLETSALEA
201: TNVEKAFQTV LTEIYHIISK KALAAQEAAA ANSAIPGQGT TINVDDTSGA AKSGCCSS
001: MAHRVEQDYD YLFKIVLIGD SGVGKTNILS RFTRNEFCLE SKSTIGVEFA TRTLQVEGKT VKAQIWDTAG QERYRAITSA YYRGAVGALL VYDITKRQTF
101: DNVLRWLREL RDHADSNIVI MMAGNKADLN HLRSVAEEDG QTLAETEGLS FLETSALEAT NVEKAFQTVL AEIYHIISKK ALAAQEAAAA NSAIPGQGTT
201: INVEDTSGAG KRGCCST
101: DNVLRWLREL RDHADSNIVI MMAGNKADLN HLRSVAEEDG QTLAETEGLS FLETSALEAT NVEKAFQTVL AEIYHIISKK ALAAQEAAAA NSAIPGQGTT
201: INVEDTSGAG KRGCCST
Arabidopsis Description
RABA2DRas-related protein RABA2d [Source:UniProtKB/Swiss-Prot;Acc:Q9FIF9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.