CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY07736
CDY54457
CDY61529
CDY63156

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01200.1	CDY07736	AT2G38360.1	21798944
AT1G01200.1	CDY54457	AT2G38360.1	21798944
AT1G01200.1	CDY61529	AT2G38360.1	21798944
AT1G01200.1	CDY63156	AT2G38360.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033277.1-P	Field mustard	cytosol	100.0	100.0
CDY15192	Canola	cytosol	98.73	98.73
AT1G01200.1	Thale cress	cytosol	89.45	89.45
KRH68938	Soybean	cytosol	68.78	69.07
VIT_15s0048g03000.t01	Wine grape	cytosol	69.2	68.62
KRG97215	Soybean	cytosol	67.93	68.22
Solyc01g096220.2.1	Tomato	plastid	69.62	67.9
KRH47850	Soybean	cytosol	70.04	67.76
KRH06418	Soybean	cytosol	69.62	67.62
PGSC0003DMT400000356	Potato	cytosol	67.51	66.39
GSMUA_Achr9P00860_001	Banana	cytosol	63.71	65.65
GSMUA_Achr3P13850_001	Banana	cytosol	61.18	61.97
TraesCS7B01G287900.1	Wheat	cytosol	58.23	61.61
Os09t0527600-01	Rice	cytosol, plasma membrane	61.6	61.09
Os06t0714600-01	Rice	cytosol	57.38	60.44
TraesCS7D01G381500.1	Wheat	cytosol	56.96	60.27
HORVU5Hr1G080990.3	Barley	cytosol, plasma membrane, vacuole	56.12	60.18
CDX86332	Canola	cytosol	56.54	60.09
CDY54519	Canola	cytosol	56.12	59.64
CDY69836	Canola	cytosol	56.12	59.38
CDX73833	Canola	cytosol	54.85	58.82
CDY00758	Canola	cytosol	54.85	58.82
CDY52622	Canola	cytosol	54.85	58.56
CDY50568	Canola	cytosol	54.85	58.56
CDY42133	Canola	cytosol	54.43	58.11
CDY08447	Canola	cytosol	54.43	58.11
TraesCS5D01G321800.1	Wheat	cytosol	59.49	57.55
EER90389	Sorghum	cytosol	50.63	57.42
CDX96994	Canola	cytosol	54.01	57.4
CDX69843	Canola	cytosol	54.01	57.4
TraesCS5B01G316300.1	Wheat	cytosol	59.92	57.26
TraesCS5A01G315700.1	Wheat	cytosol	59.49	57.09
EER97073	Sorghum	cytosol	61.18	56.64
HORVU7Hr1G091490.3	Barley	cytosol	54.43	56.58
CDY18682	Canola	cytosol	53.59	56.44
CDX81274	Canola	cytosol	53.59	55.95
Zm00001d021246_P002	Maize	cytosol	58.23	55.65
CDY50888	Canola	cytosol	50.21	54.84
CDX90160	Canola	cytosol	49.37	54.42
CDX93495	Canola	cytosol	49.79	54.38
CDY35757	Canola	cytosol	49.37	53.67
CDY20100	Canola	cytosol	49.37	53.67
CDX94631	Canola	cytosol	48.95	53.21
CDY34094	Canola	cytosol	48.95	53.21
CDY30818	Canola	cytosol	48.95	53.21
CDY15659	Canola	cytosol	48.95	53.21
CDX82451	Canola	cytosol	48.52	52.75
CDY55638	Canola	cytosol	48.1	52.53
CDY01540	Canola	cytosol	48.1	52.53
CDY02867	Canola	cytosol	48.1	52.53
CDY32661	Canola	cytosol	48.1	52.53
CDY09919	Canola	cytosol	47.26	52.34
CDX99430	Canola	cytosol	47.26	52.34
CDY06256	Canola	cytosol	47.26	52.34
CDX75804	Canola	cytosol	48.1	52.29
CDX79548	Canola	cytosol	43.46	52.28
CDY33014	Canola	cytosol	47.68	52.07
CDY64916	Canola	cytosol	46.84	51.63
CDY62557	Canola	cytosol	46.84	51.63
CDX76522	Canola	cytosol	47.26	51.61
CDY06703	Canola	cytosol	46.84	51.39
CDX96799	Canola	cytosol	46.84	51.39
CDY71720	Canola	cytosol	46.84	51.15
CDY35128	Canola	cytosol	46.41	50.93
CDX87774	Canola	cytosol	46.41	50.93
CDY40023	Canola	cytosol	45.57	50.0
CDY60884	Canola	cytosol	45.99	48.88
CDY06210	Canola	cytosol	45.15	47.98
CDY09976	Canola	cytosol	45.15	47.98
CDX69367	Canola	cytosol	36.71	47.28
CDX80299	Canola	cytosol	47.68	43.8
CDX86101	Canola	cytosol	47.26	43.75
CDX81790	Canola	plastid	45.57	40.45
CDX99094	Canola	cytosol	47.26	39.02
CDX69369	Canola	cytosol	55.7	32.35

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	GO:A0A078DM95	EnsemblPlants:CDX90017	ProteinID:CDX90017	ProteinID:CDX90017.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00150516001	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF345	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000254514B	:

Description

BnaA10g00650D

Coordinates

chrLK031861:-:1282041..1283306

Molecular Weight (calculated)

26207.9 Da

IEP (calculated)

4.916

GRAVY (calculated)

-0.222

Length

237 amino acids

Sequence
(BLAST)

001: MNEEMSGETP ENKHVSRPTL PEKIDYVFKV VVIGDSAVGK TQLLSRFTQN EFCYDSKSTI GVEFQTRTIT LQGKLVKAQI WDTAGQERYR AVTSAYYRGA
101: LGAMVVYDIT KRVSFDHVAR WVEDLRAHAD DSAVIMLVGN KADLAADKRA VTTEDAVEFA ETHRLFFSEV SALSGGNVDE AFFRLLEEIF SRVVVARKAL
201: ECENGTTAKL DGSRIDVIIS GSDLETGKTN EQASCSC

Best Arabidopsis Sequence Match ( AT1G01200.1 )
(BLAST)

001: MNEEMSGESP ENNKHVKKPT MPEKIDYVFK VVVIGDSAVG KTQLLSRFTH NEFCYDSKST IGVEFQTRTI TLRGKLVKAQ IWDTAGQERY RAVTSAYYRG
101: ALGAMVVYDI TKRLSFDHVA RWVEELRAHA DDSAVIMLVG NKADLSVGKR AVPTEDAVEF AETQRLFFSE VSALSGGNVD EAFFRLLEEI FSRVVVSRKA
201: MESDGGATVK LDGSRIDVIS GSDLETSNIK EQASCSC

Arabidopsis Description

RABA3RABA3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3F7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.