CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93818
KRH00333
KRH32827
KRH49465
KRH65569
KRH76033

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01200.1	KRG93818	AT2G38360.1	21798944
AT1G01200.1	KRH00333	AT2G38360.1	21798944
AT1G01200.1	KRH32827	AT2G38360.1	21798944
AT1G01200.1	KRH49465	AT2G38360.1	21798944
AT1G01200.1	KRH65569	AT2G38360.1	21798944
AT1G01200.1	KRH76033	AT2G38360.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47850	Soybean	cytosol	97.95	97.55
KRH68938	Soybean	cytosol	82.79	85.59
KRG97215	Soybean	cytosol	82.38	85.17
VIT_15s0048g03000.t01	Wine grape	cytosol	77.46	79.08
PGSC0003DMT400000356	Potato	cytosol	76.23	77.18
Solyc01g096220.2.1	Tomato	plastid	75.0	75.31
AT1G01200.1	Thale cress	cytosol	68.85	70.89
GSMUA_Achr9P00860_001	Banana	cytosol	66.39	70.43
Bra033277.1-P	Field mustard	cytosol	67.62	69.62
CDX90017	Canola	cytosol	67.62	69.62
CDY15192	Canola	cytosol	67.62	69.62
GSMUA_Achr3P13850_001	Banana	cytosol	63.93	66.67
KRG97554	Soybean	cytosol, endoplasmic reticulum	60.66	66.37
TraesCS7B01G287900.1	Wheat	cytosol	60.66	66.07
KRH31313	Soybean	endoplasmic reticulum	60.25	65.92
TraesCS7D01G381500.1	Wheat	cytosol	59.84	65.18
HORVU5Hr1G080990.3	Barley	cytosol, plasma membrane, vacuole	59.02	65.16
KRH59301	Soybean	cytosol, endoplasmic reticulum	60.25	64.19
Os09t0527600-01	Rice	cytosol, plasma membrane	62.7	64.02
Os06t0714600-01	Rice	cytosol	58.61	63.56
KRH33003	Soybean	cytosol	58.2	63.11
EER90389	Sorghum	cytosol	53.69	62.68
TraesCS5B01G316300.1	Wheat	cytosol	63.52	62.5
TraesCS5D01G321800.1	Wheat	cytosol	62.7	62.45
KRH75359	Soybean	endoplasmic reticulum	56.97	62.33
KRG88929	Soybean	cytosol	56.56	61.88
KRH71891	Soybean	cytosol	56.56	61.88
TraesCS5A01G315700.1	Wheat	cytosol	62.3	61.54
HORVU7Hr1G091490.3	Barley	cytosol	56.97	60.96
KRH43151	Soybean	cytosol, endoplasmic reticulum	59.02	60.76
Zm00001d021246_P002	Maize	cytosol	61.07	60.08
KRH15036	Soybean	cytosol, nucleus	52.05	58.8
EER97073	Sorghum	cytosol	61.48	58.59
KRH50137	Soybean	cytosol, mitochondrion	52.05	58.53
KRG97821	Soybean	cytosol, endoplasmic reticulum, nucleus	51.23	57.6
KRH73103	Soybean	cytosol, endoplasmic reticulum, nucleus	51.23	57.6
KRH20359	Soybean	cytosol, endoplasmic reticulum	51.23	57.6
KRH32712	Soybean	cytosol, endoplasmic reticulum, mitochondrion	51.23	57.6
KRH29738	Soybean	endoplasmic reticulum	50.82	57.41
KRH24729	Soybean	endoplasmic reticulum, nucleus	50.82	57.41
KRH30863	Soybean	cytosol	50.82	57.14
KRH55839	Soybean	endoplasmic reticulum	50.41	56.68
KRH27364	Soybean	endoplasmic reticulum	50.41	56.68
KRH25681	Soybean	cytosol	50.41	56.68
KRH26288	Soybean	endoplasmic reticulum	50.0	56.22
KRH21946	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	50.0	56.22
KRH06049	Soybean	endoplasmic reticulum	49.59	56.02
KRH22259	Soybean	cytosol, nucleus	50.0	55.96
KRH27503	Soybean	cytosol	52.05	55.7
KRH27074	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	49.59	55.5
KRH36458	Soybean	cytosol	51.64	55.26
KRH27001	Soybean	cytosol, endoplasmic reticulum	47.95	53.67
KRH22324	Soybean	cytosol, endoplasmic reticulum	47.54	53.21

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	EMBL:ACUP02009834	EnsemblPlantsGene:GLYMA_16G021800	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005794	GO:GO:0016787	UniProt:I1MKG1
EnsemblPlants:KRH06418	ProteinID:KRH06418	ProteinID:KRH06418.1	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF345	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000233B067

Description

hypothetical protein

Coordinates

chr16:-:2061940..2063500

Molecular Weight (calculated)

27105.2 Da

IEP (calculated)

4.767

GRAVY (calculated)

-0.253

Length

244 amino acids

Sequence
(BLAST)

001: MNPEMNGVEA EKRQENGHEK VDYDVQEKID YVFKVVVIGD SAVGKTQILS RFAKNEFCFD SKSTIGVEFQ TRTVTINAKV IKAQIWDTAG QERYRAVTSA
101: YYRGALGAML VYDITKRQSF DHVARWVEEL RAHADSSIVI MLVGNKADLV DQRMVPTEDA VEFAEDQGLF FSETSALSGD NVESAFLKLL EEINRVVSKK
201: ALECGLGKEN GDTNVASLKG TKVDIILGPE LEISEMKKLS SCSC

Best Arabidopsis Sequence Match ( AT1G01200.1 )
(BLAST)

001: MNEEMSGESP ENNKHVKKPT MPEKIDYVFK VVVIGDSAVG KTQLLSRFTH NEFCYDSKST IGVEFQTRTI TLRGKLVKAQ IWDTAGQERY RAVTSAYYRG
101: ALGAMVVYDI TKRLSFDHVA RWVEELRAHA DDSAVIMLVG NKADLSVGKR AVPTEDAVEF AETQRLFFSE VSALSGGNVD EAFFRLLEEI FSRVVVSRKA
201: MESDGGATVK LDGSRIDVIS GSDLETSNIK EQASCSC

Arabidopsis Description

RABA3RABA3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3F7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.