Factsheet for Zm00001d021246_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d010603_P002
Zm00001d043018_P001
Zm00001d052322_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01200.1	Zm00001d010603_P002	AT2G38360.1	21798944
AT1G01200.1	Zm00001d043018_P001	AT2G38360.1	21798944
AT1G01200.1	Zm00001d052322_P001	AT2G38360.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER97073	Sorghum	cytosol	95.97	92.97
Os09t0527600-01	Rice	cytosol, plasma membrane	83.06	86.19
HORVU5Hr1G080990.3	Barley	cytosol, plasma membrane, vacuole	75.4	84.62
TraesCS5D01G321800.1	Wheat	cytosol	83.06	84.08
TraesCS5B01G316300.1	Wheat	cytosol	83.47	83.47
TraesCS5A01G315700.1	Wheat	cytosol	82.26	82.59
GSMUA_Achr9P00860_001	Banana	cytosol	61.29	66.09
GSMUA_Achr3P13850_001	Banana	cytosol	60.89	64.53
KRH06418	Soybean	cytosol	60.08	61.07
KRH47850	Soybean	cytosol	59.68	60.41
AT1G01200.1	Thale cress	cytosol	57.66	60.34
PGSC0003DMT400000356	Potato	cytosol	57.26	58.92
Solyc01g096220.2.1	Tomato	plastid	57.66	58.85
VIT_15s0048g03000.t01	Wine grape	cytosol	56.45	58.58
KRH68938	Soybean	cytosol	55.65	58.47
KRG97215	Soybean	cytosol	55.65	58.47
Bra033277.1-P	Field mustard	cytosol	55.65	58.23
CDX90017	Canola	cytosol	55.65	58.23
CDY15192	Canola	cytosol	55.24	57.81
Zm00001d005504_P001	Maize	cytosol, extracellular	51.61	56.64
Zm00001d014278_P001	Maize	extracellular, plasma membrane	48.79	55.76
Zm00001d048222_P001	Maize	extracellular, plasma membrane	48.79	55.76
Zm00001d028002_P001	Maize	mitochondrion	48.39	55.3
Zm00001d039016_P001	Maize	cytosol, mitochondrion, plasma membrane	45.16	51.85
Zm00001d043935_P001	Maize	cytosol	45.97	51.82
Zm00001d005495_P001	Maize	extracellular, mitochondrion, plasma membrane	46.37	51.57
Zm00001d009572_P001	Maize	cytosol, mitochondrion, plasma membrane	44.76	51.39
Zm00001d034802_P001	Maize	cytosol	47.98	50.85
Zm00001d046313_P001	Maize	plastid	44.35	50.69
Zm00001d034803_P001	Maize	cytosol	47.58	50.43
Zm00001d034675_P002	Maize	cytosol	43.15	49.77
Zm00001d037004_P002	Maize	cytosol	45.16	39.02

Protein Annotations

EntrezGene:100285596	MapMan:22.8.1.1	Gene3D:3.40.50.300	UniProt:B6U715	EMBL:BT061959	EMBL:EU973030
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005768
GO:GO:0008150	GO:GO:0009504	GO:GO:0009987	GO:GO:0016787	GO:GO:0042546	ProteinID:ONM56623.1
InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF679
SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000182E88C	EnsemblPlantsGene:Zm00001d021246	EnsemblPlants:Zm00001d021246_P002
EnsemblPlants:Zm00001d021246_T002	SEG:seg	:	:	:	:

Description

Ras-related protein RABA3

Coordinates

chr7:-:146813087..146815732

Molecular Weight (calculated)

27139.0 Da

IEP (calculated)

5.107

GRAVY (calculated)

-0.296

Length

248 amino acids

Sequence
(BLAST)

001: MVARGQGGDR AEEEAAARWE SEKEAEIDYV FKVVVVGDAA VGKTQLLARF ARDEFALDSK PTIGVEFQTR TLTLHRKRVK TQIWDTAGQE RYRAVTSAYY
101: RGALGAMVVY DVTRRATFEH VARWVEELRA HADGSTVVAL IGNKADMPAA RREVPADEAA RLAEDQGLFF SEASALTGDN VERAFLTLLE EVFAAVSRRA
201: LELDEARRMR GDQGDGGGEV LSLKGTAVDV GSIMETSAMK RSSQCACS

Best Arabidopsis Sequence Match ( AT1G01200.1 )
(BLAST)

001: MNEEMSGESP ENNKHVKKPT MPEKIDYVFK VVVIGDSAVG KTQLLSRFTH NEFCYDSKST IGVEFQTRTI TLRGKLVKAQ IWDTAGQERY RAVTSAYYRG
101: ALGAMVVYDI TKRLSFDHVA RWVEELRAHA DDSAVIMLVG NKADLSVGKR AVPTEDAVEF AETQRLFFSE VSALSGGNVD EAFFRLLEEI FSRVVVSRKA
201: MESDGGATVK LDGSRIDVIS GSDLETSNIK EQASCSC

Arabidopsis Description

RABA3RABA3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3F7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.