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Maize
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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 6
  • cytosol 1
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:cytosol, plasma membrane, plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:cytosol
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plasma membrane
 mitochondrion: 27297264
msms PMID: 27297264 doi
D Dahal, KJ Newton, BP Mooney
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
PPI

Inferred distinct locusB in Crop

locusBlocations
Zm00001d008982_P001
Zm00001d009978_P001
Zm00001d010538_P005
Zm00001d010603_P002
Zm00001d012776_P001
Zm00001d016041_P001
Zm00001d020229_P001
Zm00001d020729_P001
Zm00001d034638_P001
Zm00001d037453_P001
Zm00001d038380_P001
Zm00001d038768_P001
Zm00001d039316_P001
Zm00001d043018_P001
Zm00001d043551_P003
Zm00001d045580_P001
Zm00001d047461_P001
Zm00001d052322_P001

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G38360.1 Zm00001d010538_P005 AT3G46060.1 21798944
AT2G38360.1 Zm00001d034638_P001 AT3G46060.1 21798944
AT2G38360.1 Zm00001d038380_P001 AT3G46060.1 21798944
AT5G01640.1 Zm00001d045580_P001 AT4G25660.1 21798944
AT5G01640.1 Zm00001d010603_P002 AT5G01640.1 21798944
AT5G01640.1 Zm00001d043018_P001 AT5G01640.1 21798944
AT5G01640.1 Zm00001d052322_P001 AT5G01640.1 21798944
AT5G01640.1 Zm00001d009978_P001 AT5G12390.1 21798944
AT5G01640.1 Zm00001d047461_P001 AT5G12390.1 21798944
AT5G01640.1 Zm00001d008982_P001 AT5G41600.1 21798944
AT5G01640.1 Zm00001d012776_P001 AT5G41600.1 21798944
AT5G01640.1 Zm00001d016041_P001 AT5G41600.1 21798944
AT5G01640.1 Zm00001d020229_P001 AT5G41600.1 21798944
AT5G01640.1 Zm00001d020729_P001 AT5G41600.1 21798944
AT5G01640.1 Zm00001d037453_P001 AT5G41600.1 21798944
AT5G01640.1 Zm00001d038768_P001 AT5G41600.1 21798944
AT5G01640.1 Zm00001d039316_P001 AT5G41600.1 21798944
AT5G01640.1 Zm00001d043551_P003 AT5G41600.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EES03822 Sorghum plastid 94.09 92.83
Os01t0827400-01 Rice extracellular, mitochondrion, plasma membrane 58.64 88.97
TraesCS3A01G348100.1 Wheat plastid 82.73 85.85
HORVU3Hr1G088130.1 Barley plastid 85.45 85.45
TraesCS3B01G380000.1 Wheat plastid 82.73 85.45
TraesCS3D01G341700.1 Wheat plastid 85.0 84.62
Zm00001d010603_P002 Maize mitochondrion 72.73 73.73
HORVU2Hr1G086930.1 Barley cytosol, plastid 34.55 67.86
GSMUA_Achr5P07440_001 Banana plastid 57.73 59.07
GSMUA_Achr3P10010_001 Banana plastid 57.73 58.8
Zm00001d052322_P001 Maize plastid 48.64 56.61
CDY63156 Canola plastid 47.73 48.17
PGSC0003DMT400034320 Potato plastid 46.36 48.11
CDY07736 Canola plastid 48.18 47.75
CDX80758 Canola plastid 46.36 47.66
Bra000056.1-P Field mustard plastid 47.27 46.85
KRG93818 Soybean extracellular, plasma membrane, vacuole 17.73 46.43
AT2G38360.1 Thale cress plastid 46.36 46.36
KRH76033 Soybean endoplasmic reticulum 45.45 45.66
KRH65569 Soybean plastid 46.36 44.93
CDY61529 Canola plastid 25.45 44.44
Solyc10g076360.1.1 Tomato plastid 44.55 43.75
AT5G01640.1 Thale cress plastid 44.09 43.5
PGSC0003DMT400041063 Potato plastid 44.55 42.98
KRH49465 Soybean plastid 41.82 41.26
KRH00333 Soybean plastid 42.27 40.97
AT4G00005.1 Thale cress extracellular, plasma membrane 21.36 39.83
Bra005112.1-P Field mustard plastid 29.09 38.1
KRH32827 Soybean plastid 37.27 36.28
CDY54457 Canola endoplasmic reticulum, peroxisome, plasma membrane 30.0 36.26
Zm00001d039455_P002 Maize extracellular, mitochondrion 30.45 34.72
Zm00001d037747_P001 Maize plastid 26.82 31.38
Zm00001d013069_P001 Maize plastid 31.36 30.53
Zm00001d013306_P001 Maize plastid 36.36 29.3
Zm00001d034469_P001 Maize plastid 30.0 29.07
Zm00001d033966_P001 Maize plastid 34.55 26.03
Protein Annotations
EMBL:BT068069EMBL:EU962078EnsemblPlants:Zm00001d043018_P001EnsemblPlants:Zm00001d043018_T001EnsemblPlantsGene:Zm00001d043018EntrezGene:100282720
GO:GO:0005575GO:GO:0016020GO:GO:0016021InterPro:Prenylated_rab_accept_PRA1PANTHER:PTHR19317PANTHER:PTHR19317:SF12
PFAM:PF03208ProteinID:ONM36732.1SEG:segTMHMM:TMhelixUniParc:UPI000182C65AUniProt:B6TAR3
MapMan:22.8.4.3.2:::::
Description
PRA1 family protein B4
Coordinates
chr3:+:186599557..186600219
Molecular Weight (calculated)
22950.7 Da
IEP (calculated)
9.313
GRAVY (calculated)
0.556
Length
220 amino acids
Sequence
(BLAST)
001: MASAATPAPL LPVTSTAAGG GSAPSSATGL SDAALATPAF RLFVSRLAET ARRSLADRRP WTELLDRSAF SRPDSLSEAT SRLRRNLGYF RVNYAAVVAF
101: SLAASLLAHP FSLLVLLSIL GAWCFLYVFR APDQLVVLFG RTFTDRETLL GLTVASVLAF FLTSVASLII SGLLVGGAIV AAHGACRIPE DLFLDDPSAA
201: SSGNTTSRLI SFLASPGSGV
Best Arabidopsis Sequence Match ( AT5G05380.2 )
(BLAST)
001: MGLFFMNLLK STWTVEMLRC RERSMVRVIT RDHDVNTGNR LLQKKSIHSY GPLIHAPSSH PHAQSCVMMA NPPTLPISDH SGGGSQSQQP VSTPAFRTFL
101: SRLSSSIRQS LSQRRPWLEL VDRSAISRPE SLTDAYSRIR RNLPYFKVNY VTIVSLVLAL SLLSHPFSLL VLLCLFCAWI FLYLFRPSDQ PLVVLGRTFS
201: DRETLGVLVI LTIVVVFLTS VGSLLTSALM IGFGIVCLHG AFRVPEDLFL DDQEPANTGL LSFLSGAATS AAVAAASTPA SGRV
Arabidopsis Description
PRA1.B3prenylated RAB acceptor 1.B3 [Source:TAIR;Acc:AT5G05380]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.