Factsheet for HORVU2Hr1G086930.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G070360.1
HORVU1Hr1G072070.1
HORVU1Hr1G082010.3
HORVU2Hr1G086930.1
HORVU3Hr1G030760.2
HORVU3Hr1G069970.2
HORVU3Hr1G086830.7
HORVU3Hr1G088130.1
HORVU4Hr1G024530.1
HORVU4Hr1G074140.2
HORVU5Hr1G047520.1
HORVU5Hr1G112790.2
HORVU7Hr1G002080.2
HORVU7Hr1G075700.2
HORVU7Hr1G081290.4

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38360.1	HORVU1Hr1G072070.1	AT3G46060.1	21798944
AT2G38360.1	HORVU3Hr1G086830.7	AT3G46060.1	21798944
AT2G38360.1	HORVU5Hr1G112790.2	AT3G46060.1	21798944
AT5G01640.1	HORVU7Hr1G002080.2	AT4G25660.1	21798944
AT5G01640.1	HORVU1Hr1G070360.1	AT5G01640.1	21798944
AT5G01640.1	HORVU2Hr1G086930.1	AT5G01640.1	21798944
AT5G01640.1	HORVU3Hr1G088130.1	AT5G01640.1	21798944
AT5G01640.1	HORVU4Hr1G024530.1	AT5G01640.1	21798944
AT5G01640.1	HORVU5Hr1G047520.1	AT5G01640.1	21798944
AT5G01640.1	HORVU4Hr1G074140.2	AT5G12390.1	21798944
AT5G01640.1	HORVU1Hr1G082010.3	AT5G41600.1	21798944
AT5G01640.1	HORVU3Hr1G030760.2	AT5G41600.1	21798944
AT5G01640.1	HORVU3Hr1G069970.2	AT5G41600.1	21798944
AT5G01640.1	HORVU7Hr1G075700.2	AT5G41600.1	21798944
AT5G01640.1	HORVU7Hr1G081290.4	AT5G41600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0827400-01	Rice	extracellular, mitochondrion, plasma membrane	66.07	51.03
HORVU3Hr1G088130.1	Barley	plastid	83.04	42.27
TraesCS3B01G380000.1	Wheat	plastid	80.36	42.25
TraesCS3A01G348100.1	Wheat	plastid	79.46	41.98
TraesCS3D01G341700.1	Wheat	plastid	79.46	40.27
EES03822	Sorghum	plastid	70.54	35.43
Zm00001d043018_P001	Maize	mitochondrion	67.86	34.55
HORVU1Hr1G070360.1	Barley	plastid	63.39	31.98
Bra005112.1-P	Field mustard	plastid	40.18	26.79
CDY54457	Canola	endoplasmic reticulum, peroxisome, plasma membrane	40.18	24.73
GSMUA_Achr3P10010_001	Banana	plastid	47.32	24.54
GSMUA_Achr5P07440_001	Banana	plastid	45.54	23.72
AT2G38360.1	Thale cress	plastid	44.64	22.73
Bra000056.1-P	Field mustard	plastid	43.75	22.07
CDY07736	Canola	plastid	43.75	22.07
CDY63156	Canola	plastid	42.86	22.02
HORVU4Hr1G024530.1	Barley	plastid	43.75	21.68
CDX80758	Canola	plastid	41.07	21.5
KRH76033	Soybean	endoplasmic reticulum	41.96	21.46
PGSC0003DMT400034320	Potato	plastid	39.29	20.75
Solyc10g076360.1.1	Tomato	plastid	41.07	20.54
AT4G00005.1	Thale cress	extracellular, plasma membrane	21.43	20.34
KRH65569	Soybean	plastid	41.07	20.26
PGSC0003DMT400041063	Potato	plastid	41.07	20.18
AT5G01640.1	Thale cress	plastid	38.39	19.28
KRH00333	Soybean	plastid	38.39	18.94
KRH32827	Soybean	plastid	37.5	18.58
KRH49465	Soybean	plastid	36.61	18.39
HORVU5Hr1G047520.1	Barley	endoplasmic reticulum, plastid	36.61	16.94
OQU79263	Sorghum	plastid	16.07	10.91
HORVU3Hr1G018940.2	Barley	plastid	24.11	10.59
HORVU5Hr1G106520.1	Barley	cytosol	21.43	10.26
HORVU1Hr1G028520.1	Barley	plastid	19.64	10.19
HORVU0Hr1G013770.1	Barley	mitochondrion	23.21	8.1
KRG93818	Soybean	extracellular, plasma membrane, vacuole	4.46	5.95
CDY61529	Canola	plastid	5.36	4.76

Protein Annotations

EnsemblPlants:HORVU2Hr1G086930.1	EnsemblPlantsGene:HORVU2Hr1G086930	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:Prenylated_rab_accept_PRA1
PANTHER:PTHR19317	PANTHER:PTHR19317:SF12	PFAM:PF03208	SEG:seg	TMHMM:TMhelix	UniParc:UPI000B47A926
UniProt:A0A287ISY0	MapMan:22.8.4.3.2	:	:	:	:

Description

PRA1 family protein [Source:UniProtKB/TrEMBL;Acc:A0A287ISY0]

Coordinates

chrchr2H:-:625445913..625446474

Molecular Weight (calculated)

10584.8 Da

IEP (calculated)

5.506

GRAVY (calculated)

0.746

Length

112 amino acids

Sequence
(BLAST)

001: NPFIALGPSS FVFSQXXXXX XXXXXQPVVL FGRTFTDRET LLGLVVSSLL AFFLTSVASL IISGLLVGGA LVAVHGAFRM PEDLFLDDST AVSSGNASHR
101: LLSFLASPGS GV

Best Arabidopsis Sequence Match ( AT2G40380.1 )
(BLAST)

001: MSSSPAILPV TNQQAATQSQ PPINSHAFRT FLSRLSSSLR ESLSQRRPWL ELVDRSSFAR PDSLTDSFSR IRKNLAYFKV NYSAIVSLVL AFSLLSHPFS
101: LLVLLSLLGS WMFLYLFRSS DQPLVLFGRS FSDRETLLGL VLTTIVVVFM TSVGSLLTSA LTIGIAIVCL HGAFRVPDDL FLDEQEPANA GLLSFIGNSA
201: ATSAAASVVA GRV

Arabidopsis Description

PRA1B2PRA1 family protein [Source:UniProtKB/TrEMBL;Acc:A0A178VRS5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.