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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 1
  • plastid 4
  • cytosol 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 2
  • plasma membrane 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, nucleus, plastid, vacuole
BaCelLo:nucleus
ChloroP:plastid
iPSORT:plastid
MultiLoc:cytosol
PProwler:secretory
TargetP:plastid
WoLF PSORT:vacuole
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX69682
CDX74794
CDX78308
CDX80758
CDX81033
CDX81068
CDX85689
CDX89402
CDX89404
CDX91164
CDX94426
CDX94429
CDX97191
CDY18870
CDY49480
CDY52126
CDY58876
CDY66007
CDY67905

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G01640.1 CDX74794 AT2G40380.1 21798944
AT5G01640.1 CDY18870 AT2G40380.1 21798944
AT5G01640.1 CDX89402 AT4G25660.1 21798944
AT5G01640.1 CDX89404 AT4G25660.1 21798944
AT5G01640.1 CDX94426 AT4G25660.1 21798944
AT5G01640.1 CDX94429 AT4G25660.1 21798944
AT5G01640.1 CDY49480 AT4G25660.1 21798944
AT5G01640.1 CDY66007 AT4G25660.1 21798944
AT5G01640.1 CDX80758 AT5G01640.1 21798944
AT5G01640.1 CDX81033 AT5G07110.1 21798944
AT5G01640.1 CDY58876 AT5G07110.1 21798944
AT5G01640.1 CDX78308 AT5G07730.1 21798944
AT5G01640.1 CDX81068 AT5G07730.1 21798944
AT5G01640.1 CDX69682 AT5G12390.1 21798944
AT5G01640.1 CDX85689 AT5G12390.1 21798944
AT5G01640.1 CDX91164 AT5G12390.1 21798944
AT5G01640.1 CDX97191 AT5G12390.1 21798944
AT5G01640.1 CDY52126 AT5G58750.1 21798944
AT5G01640.1 CDY67905 AT5G58750.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT5G01640.1 Thale cress plastid 81.31 78.03
AT4G00005.1 Thale cress extracellular, plasma membrane 38.78 70.34
KRG93818 Soybean extracellular, plasma membrane, vacuole 23.83 60.71
CDY63156 Canola plastid 59.35 58.26
CDY07736 Canola plastid 59.81 57.66
CDY31997 Canola plastid 56.54 57.62
GSMUA_Achr5P07440_001 Banana plastid 57.01 56.74
CDX74794 Canola plastid 56.07 56.34
CDX72173 Canola plastid 53.27 56.16
CDY27245 Canola plastid 53.27 56.16
CDX67633 Canola plastid 55.14 55.92
CDY18870 Canola plastid 54.21 55.5
KRH76033 Soybean endoplasmic reticulum 56.54 55.25
GSMUA_Achr3P10010_001 Banana plastid 55.61 55.09
Solyc10g076360.1.1 Tomato plastid 57.48 54.91
PGSC0003DMT400034320 Potato plastid 53.74 54.25
PGSC0003DMT400041063 Potato plastid 57.01 53.51
KRH65569 Soybean plastid 55.14 51.98
CDX70153 Canola plastid 51.4 51.16
Zm00001d010603_P002 Maize mitochondrion 51.87 51.15
Os01t0827400-01 Rice extracellular, mitochondrion, plasma membrane 34.58 51.03
KXG22202 Sorghum plastid 50.93 50.23
GSMUA_Achr4P18690_001 Banana plastid 51.87 50.23
CDY58876 Canola plastid 50.93 50.0
GSMUA_Achr7P22310_001 Banana plastid 43.93 50.0
Os12t0107600-00 Rice plastid 50.93 49.55
Os11t0107600-01 Rice plastid 50.93 49.55
CDX81033 Canola plastid 50.47 49.54
Os05t0474400-01 Rice plasma membrane, vacuole 50.0 48.64
GSMUA_Achr10P... Banana plastid 41.12 48.35
CDY54457 Canola endoplasmic reticulum, peroxisome, plasma membrane 41.12 48.35
HORVU4Hr1G024530.1 Barley plastid 50.93 48.23
HORVU1Hr1G070360.1 Barley plastid 50.0 48.2
TraesCS1B01G307400.1 Wheat golgi, unclear 49.53 48.18
GSMUA_Achr5P14320_001 Banana plastid 42.06 48.13
KRH00333 Soybean plastid 50.93 48.02
TraesCS4D01G132000.1 Wheat plastid 50.93 48.02
TraesCS1A01G297900.1 Wheat plastid 49.53 47.96
TraesCS1D01G293300.1 Wheat plastid 49.53 47.96
KRH49465 Soybean plastid 49.53 47.53
TraesCS3B01G380000.1 Wheat plastid 47.2 47.42
TraesCS4A01G180500.1 Wheat plastid 50.47 47.37
TraesCS3A01G348100.1 Wheat plastid 46.73 47.17
TraesCS4B01G137300.1 Wheat plastid 50.0 47.14
CDY05662 Canola plastid 15.89 46.58
CDY25186 Canola plastid 18.69 46.51
OQU82692 Sorghum plastid 48.6 46.43
Zm00001d043018_P001 Maize mitochondrion 47.66 46.36
HORVU3Hr1G088130.1 Barley plastid 47.66 46.36
CDY61529 Canola plastid 27.1 46.03
TraesCS3D01G341700.1 Wheat plastid 47.2 45.7
CDY41253 Canola plastid 18.22 45.35
EES15518 Sorghum plastid 49.07 45.06
EES03822 Sorghum plastid 46.73 44.84
Zm00001d052322_P001 Maize plastid 39.25 44.44
KRH32827 Soybean plastid 45.33 42.92
TraesCS5D01G156800.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 43.93 41.59
TraesCS5A01G151600.1 Wheat plastid 43.93 41.59
HORVU2Hr1G086930.1 Barley cytosol, plastid 21.5 41.07
TraesCS5B01G150200.1 Wheat plastid 42.99 40.71
KXG38626 Sorghum golgi, plasma membrane, plastid 33.64 38.92
HORVU5Hr1G047520.1 Barley endoplasmic reticulum, plastid 43.46 38.43
CDY51735 Canola plasma membrane 31.31 36.81
CDY37483 Canola plasma membrane 30.84 36.26
CDX97509 Canola plasma membrane 28.97 34.25
CDY23634 Canola plasma membrane 28.5 33.7
CDY33064 Canola cytosol, plasma membrane, plastid 29.44 33.69
CDY24050 Canola cytosol, plasma membrane, plastid 28.97 33.16
CDY26125 Canola cytosol, plasma membrane, plastid 28.04 31.75
CDY08228 Canola plasma membrane 28.04 31.75
CDY32804 Canola plastid 27.57 31.38
CDY17405 Canola plastid 28.04 31.25
CDX95035 Canola plastid 30.37 31.25
CDY15494 Canola plasma membrane 25.7 30.9
CDX86646 Canola plasma membrane 25.23 30.34
CDX93539 Canola plastid 29.44 30.29
CDY43514 Canola mitochondrion 24.77 30.29
OQU79263 Sorghum plastid 22.9 29.7
CDX81845 Canola plasma membrane 24.77 29.28
CDY06788 Canola plastid 26.17 28.87
CDY26225 Canola plasma membrane 24.77 28.8
CDY50022 Canola cytosol, endoplasmic reticulum, plasma membrane 24.77 28.49
CDY51077 Canola cytosol, endoplasmic reticulum, plasma membrane 24.3 28.11
CDY59501 Canola plasma membrane 23.83 27.72
CDY51734 Canola plastid 23.83 24.4
CDY37482 Canola plastid 23.36 23.92
CDY55133 Canola plasma membrane 22.43 22.54
CDY51733 Canola plastid 21.96 21.96
Protein Annotations
EnsemblPlants:CDX80758EnsemblPlantsGene:GSBRNA2T00134131001GO:A0A078D068InterPro:Prenylated_rab_accept_PRA1PANTHER:PTHR19317PANTHER:PTHR19317:SF34
PFAM:PF03208ProteinID:CDX80758ProteinID:CDX80758.1SEG:segTMHMM:TMhelixUniParc:UPI0004EB6E5A
MapMan:22.8.4.3.2:::::
Description
BnaC03g00120D
Coordinates
chrLK031823:+:82293..83093
Molecular Weight (calculated)
23056.8 Da
IEP (calculated)
7.345
GRAVY (calculated)
0.521
Length
214 amino acids
Sequence
(BLAST)
001: MVSSDSNVLP VSTTQPPTLT ESQPPAVRAF VNRFTETVRD GLSRSRPWSE LLDRSAFAKP DSLSEAASRL RKNSSYFRAN YVCIVSLILA FSLLAHPFSL
101: VLLVCLAASW LFLYLFRPVD RPLILFGRSF SDLETLGALI LSTIAVIFFT SVGSVLISAL LVGIATVCVH GAFRAPNDLF LDEQDPAAAG FLSFIGVPTT
201: YSSLSSTSSA PSAV
Best Arabidopsis Sequence Match ( AT5G01640.1 )
(BLAST)
001: MVSTNPPVLP ISTTATDTTN QPPIVTAVVE SQPPVVRAFV NGVTETVCGG LSRSRPWSEL LDRSAFTKPD SLSEAGTRFR KNSSYFRVNY VCIVALILGF
101: SLLAHPFSLI LLLCLAASWL FLYLFRPSDR PLILFGRSFS EYETLGGLIL STIAVIFFTS VGSVLISALM IGIATICVHG AFRAPDDLFL DEQDHAASGF
201: LSFIGVPAIP SVAPSASSAA SPV
Arabidopsis Description
PRA1B5PRA1 family protein [Source:UniProtKB/TrEMBL;Acc:A0A178UH31]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.