Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 4
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G151600.1 | Wheat | plastid | 97.79 | 97.79 |
| TraesCS5B01G150200.1 | Wheat | plastid | 95.58 | 95.58 |
| HORVU5Hr1G047520.1 | Barley | endoplasmic reticulum, plastid | 88.5 | 82.64 |
| Os11t0107600-01 | Rice | plastid | 71.24 | 73.18 |
| Os12t0107600-00 | Rice | plastid | 70.35 | 72.27 |
| TraesCS4D01G132000.1 | Wheat | plastid | 72.12 | 71.81 |
| OQU82692 | Sorghum | plastid | 67.7 | 68.3 |
| EES15518 | Sorghum | plastid | 68.14 | 66.09 |
| Zm00001d052322_P001 | Maize | plastid | 53.54 | 64.02 |
| KXG38626 | Sorghum | golgi, plasma membrane, plastid | 46.46 | 56.76 |
| GSMUA_Achr3P10010_001 | Banana | plastid | 53.1 | 55.56 |
| GSMUA_Achr5P07440_001 | Banana | plastid | 51.33 | 53.95 |
| TraesCS1D01G293300.1 | Wheat | plastid | 50.44 | 51.58 |
| TraesCS3D01G341700.1 | Wheat | plastid | 49.12 | 50.23 |
| KRH76033 | Soybean | endoplasmic reticulum | 46.02 | 47.49 |
| Solyc10g076360.1.1 | Tomato | plastid | 46.46 | 46.88 |
| CDY07736 | Canola | plastid | 46.02 | 46.85 |
| Bra000056.1-P | Field mustard | plastid | 45.58 | 46.4 |
| CDY63156 | Canola | plastid | 44.25 | 45.87 |
| KRH65569 | Soybean | plastid | 46.02 | 45.81 |
| AT4G00005.1 | Thale cress | extracellular, plasma membrane | 23.89 | 45.76 |
| PGSC0003DMT400041063 | Potato | plastid | 46.02 | 45.61 |
| AT2G38360.1 | Thale cress | plastid | 43.81 | 45.0 |
| AT5G01640.1 | Thale cress | plastid | 43.81 | 44.39 |
| KRG93818 | Soybean | extracellular, plasma membrane, vacuole | 16.37 | 44.05 |
| CDX80758 | Canola | plastid | 41.59 | 43.93 |
| PGSC0003DMT400034320 | Potato | plastid | 41.15 | 43.87 |
| KRH00333 | Soybean | plastid | 43.36 | 43.17 |
| KRH49465 | Soybean | plastid | 42.04 | 42.6 |
| Bra005112.1-P | Field mustard | plastid | 30.97 | 41.67 |
| CDY61529 | Canola | plastid | 22.12 | 39.68 |
| CDY54457 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 31.86 | 39.56 |
| KRH32827 | Soybean | plastid | 37.61 | 37.61 |
| TraesCS1D01G130300.1 | Wheat | plastid | 24.78 | 29.32 |
| TraesCS5D01G450800.1 | Wheat | plastid | 29.65 | 28.76 |
| TraesCS3D01G106500.1 | Wheat | plastid | 23.45 | 27.89 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G156800.1 | EnsemblPlantsGene:TraesCS5D01G156800 | InterPro:Prenylated_rab_accept_PRA1 | PANTHER:PTHR19317 | PANTHER:PTHR19317:SF35 | PFAM:PF03208 |
| SEG:seg | TMHMM:TMhelix | MapMan:22.8.4.3.2 | : | : | : |
Description
No Description!
Coordinates
chr5D:-:244640761..244641441
Molecular Weight (calculated)
23038.8 Da
IEP (calculated)
8.731
GRAVY (calculated)
0.564
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAASPPLLP VSVLPAATAA TATIVLPVPD TSSAADQRAY LARLLDSAKR SLSGARPWAE LLHRAALSRP DSLADATARV RRNLAYFRVN YALLVALSLA
101: ASLLAHPFAL AALLALLAAW CALYLLRPAD APPLAAFGKT FSERETLGGL LAASAFVVFV TSVGSIVFSA LAAGAALACA HGAFRVPEEQ LFLDDDLQPG
201: AGGRAGSSVD LLSFFTNAAG GGGGRG
101: ASLLAHPFAL AALLALLAAW CALYLLRPAD APPLAAFGKT FSERETLGGL LAASAFVVFV TSVGSIVFSA LAAGAALACA HGAFRVPEEQ LFLDDDLQPG
201: AGGRAGSSVD LLSFFTNAAG GGGGRG
001: MASSAPPVLP ISNPQTVPSA APSSVESQPP IATPAFRNFI NQITETVKNG LSKRRPWAEL ADRSALSKPE SISDAAVRIR KNYSYFKVNY LTVATAIVGF
101: SLVTHPFSLV FLLCLLASWL FLYLFRPTDQ PIVLFGRTFS DRETLGCLIL FSIFVIFLTD VGSVLVSAMM IGVALICAHG AFRAPEDLFL DEQEPAATGF
201: LSFLGGAASS AAPAVIAARV
101: SLVTHPFSLV FLLCLLASWL FLYLFRPTDQ PIVLFGRTFS DRETLGCLIL FSIFVIFLTD VGSVLVSAMM IGVALICAHG AFRAPEDLFL DEQEPAATGF
201: LSFLGGAASS AAPAVIAARV
Arabidopsis Description
PRA1B4PRA1 family protein B4 [Source:UniProtKB/Swiss-Prot;Acc:O80915]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.