CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 6
peroxisome 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER87703
EER89811
EER93195
EES03822
EES15518
EES19450
EES19652
EES19841
KXG22202
KXG31516
KXG33320
KXG38626
OQU79263
OQU82692
OQU84758
OQU88745
OQU92576

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38360.1	EER93195	AT3G46060.1	21798944
AT2G38360.1	EES19652	AT3G46060.1	21798944
AT2G38360.1	OQU88745	AT3G46060.1	21798944
AT5G01640.1	EER87703	AT4G25660.1	21798944
AT5G01640.1	EES03822	AT5G01640.1	21798944
AT5G01640.1	EES15518	AT5G01640.1	21798944
AT5G01640.1	KXG22202	AT5G01640.1	21798944
AT5G01640.1	KXG38626	AT5G01640.1	21798944
AT5G01640.1	OQU79263	AT5G01640.1	21798944
AT5G01640.1	OQU82692	AT5G01640.1	21798944
AT5G01640.1	EES19450	AT5G12390.1	21798944
AT5G01640.1	OQU92576	AT5G12390.1	21798944
AT5G01640.1	EER89811	AT5G41600.1	21798944
AT5G01640.1	EES19841	AT5G41600.1	21798944
AT5G01640.1	KXG31516	AT5G41600.1	21798944
AT5G01640.1	KXG33320	AT5G41600.1	21798944
AT5G01640.1	OQU84758	AT5G41600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU82692	Sorghum	plastid	92.7	96.43
Zm00001d052322_P001	Maize	plastid	73.82	91.01
Os11t0107600-01	Rice	plastid	74.68	79.09
Os12t0107600-00	Rice	plastid	72.53	76.82
HORVU4Hr1G024530.1	Barley	plastid	71.24	73.45
TraesCS4A01G180500.1	Wheat	plastid	71.24	72.81
TraesCS4D01G132000.1	Wheat	plastid	70.82	72.69
TraesCS4B01G137300.1	Wheat	plastid	70.39	72.25
TraesCS5D01G156800.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	66.09	68.14
KXG38626	Sorghum	golgi, plasma membrane, plastid	54.08	68.11
TraesCS5A01G151600.1	Wheat	plastid	65.67	67.7
TraesCS5B01G150200.1	Wheat	plastid	65.24	67.26
GSMUA_Achr3P10010_001	Banana	plastid	57.08	61.57
GSMUA_Achr5P07440_001	Banana	plastid	56.65	61.4
HORVU5Hr1G047520.1	Barley	endoplasmic reticulum, plastid	62.23	59.92
KXG22202	Sorghum	plastid	55.79	59.91
EES03822	Sorghum	plastid	54.08	56.5
CDY07736	Canola	plastid	49.36	51.8
CDY63156	Canola	plastid	48.07	51.38
Bra000056.1-P	Field mustard	plastid	48.93	51.35
KRH76033	Soybean	endoplasmic reticulum	47.21	50.23
AT2G38360.1	Thale cress	plastid	46.35	49.09
CDX80758	Canola	plastid	45.06	49.07
KRH65569	Soybean	plastid	47.64	48.9
CDY61529	Canola	plastid	26.18	48.41
Solyc10g076360.1.1	Tomato	plastid	45.49	47.32
KRG93818	Soybean	extracellular, plasma membrane, vacuole	16.74	46.43
AT5G01640.1	Thale cress	plastid	44.21	46.19
Bra005112.1-P	Field mustard	plastid	33.05	45.83
PGSC0003DMT400041063	Potato	plastid	44.64	45.61
PGSC0003DMT400034320	Potato	plastid	41.2	45.28
KRH00333	Soybean	plastid	43.78	44.93
AT4G00005.1	Thale cress	extracellular, plasma membrane	22.32	44.07
KRH49465	Soybean	plastid	42.06	43.95
CDY54457	Canola	endoplasmic reticulum, peroxisome, plasma membrane	33.48	42.86
KRH32827	Soybean	plastid	37.77	38.94
EES00126	Sorghum	plastid	28.76	34.9
OQU79263	Sorghum	plastid	24.03	33.94
OQU77594	Sorghum	plastid	27.04	32.14
EER90731	Sorghum	plastid	30.9	32.14
EER93477	Sorghum	plastid	33.91	26.87

Protein Annotations

EnsemblPlants:EES15518	EnsemblPlantsGene:SORBI_3008G006300	EntrezGene:8055498	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	InterPro:Prenylated_rab_accept_PRA1	PANTHER:PTHR19317	PANTHER:PTHR19317:SF35	PFAM:PF03208
ProteinID:EES15518	ProteinID:EES15518.1	RefSeq:XP_002441680.1	SEG:seg	TMHMM:TMhelix	unigene:Sbi.5024
UniParc:UPI0001A87B2A	UniProt:C5YQ40	MapMan:22.8.4.3.2	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:521494..522894

Molecular Weight (calculated)

23609.4 Da

IEP (calculated)

7.959

GRAVY (calculated)

0.548

Length

233 amino acids

Sequence
(BLAST)

001: MAAASPPLLP TTVVPAAAAP PSTPAPAPIP IPTSLSSADA TDANPAAIRA FLSRLLDSTR RALSGARPWS ELADRSALSR PDTLAEATSR LRKNLAYFRV
101: NYAAVAALCL AASLLAHPFS LAALLALLAA WCLLYVLRPA DAPPVAAFGR NFSDREVLGG LVAASAFVVF LTSVGSLIFS ALALGAAVVC AHGACRVPED
201: LFLDEADHQA AGGGAGNPLL SFIASATGGS GRV

Best Arabidopsis Sequence Match ( AT2G38360.1 )
(BLAST)

001: MASSAPPVLP ISNPQTVPSA APSSVESQPP IATPAFRNFI NQITETVKNG LSKRRPWAEL ADRSALSKPE SISDAAVRIR KNYSYFKVNY LTVATAIVGF
101: SLVTHPFSLV FLLCLLASWL FLYLFRPTDQ PIVLFGRTFS DRETLGCLIL FSIFVIFLTD VGSVLVSAMM IGVALICAHG AFRAPEDLFL DEQEPAATGF
201: LSFLGGAASS AAPAVIAARV

Arabidopsis Description

PRA1B4PRA1 family protein B4 [Source:UniProtKB/Swiss-Prot;Acc:O80915]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.